Hb_001172_080

Information

Type -
Description -
Location Contig1172: 179076-181572
Sequence    

Annotation

kegg
ID pper:PRUPE_ppb019121mg
description hypothetical protein
nr
ID XP_012487705.1
description PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID M5XLP5
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppb019121mg PE=4 SV=1
Gene Ontology
ID GO:0003676
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001172_080 0.0 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
2 Hb_000445_300 0.2624216828 - - PREDICTED: wall-associated receptor kinase 5-like [Eucalyptus grandis]
3 Hb_000032_310 0.2704492874 - - ring finger protein, putative [Ricinus communis]
4 Hb_000105_020 0.2708674029 - - PREDICTED: serine/threonine-protein kinase TOR-like [Malus domestica]
5 Hb_012565_080 0.273917793 - - serine/threonine kinase, putative [Ricinus communis]
6 Hb_000521_170 0.2774245019 - - PREDICTED: callose synthase 1 [Jatropha curcas]
7 Hb_000120_970 0.2790786864 - - PREDICTED: probable acyl-activating enzyme 2 isoform X2 [Jatropha curcas]
8 Hb_001377_250 0.2803870089 - - dynamin, putative [Ricinus communis]
9 Hb_001416_020 0.28158356 - - H(\+)-transporting atpase plant/fungi plasma membrane type, putative [Ricinus communis]
10 Hb_008948_160 0.2825830435 - - PREDICTED: uncharacterized protein LOC104214688 isoform X2 [Nicotiana sylvestris]
11 Hb_000283_150 0.282969855 - - Ankyrin repeat family protein [Theobroma cacao]
12 Hb_002016_040 0.2845317874 rubber biosynthesis Gene Name: SRPP8 PREDICTED: stress-related protein [Jatropha curcas]
13 Hb_020178_060 0.2888247649 - - PREDICTED: nucleobase-ascorbate transporter 3 [Jatropha curcas]
14 Hb_040290_010 0.2889979084 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
15 Hb_010398_010 0.2922197526 - - PREDICTED: LOW QUALITY PROTEIN: mediator of RNA polymerase II transcription subunit 15a-like [Malus domestica]
16 Hb_004254_110 0.2923781044 - - -
17 Hb_006185_020 0.2924763084 - - PREDICTED: midasin [Jatropha curcas]
18 Hb_012528_030 0.2943525148 - - -
19 Hb_003656_120 0.2985371779 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-3-like [Jatropha curcas]
20 Hb_006103_040 0.2994945391 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_001172_080 Hb_001172_080 Hb_000445_300 Hb_000445_300 Hb_001172_080--Hb_000445_300 Hb_000032_310 Hb_000032_310 Hb_001172_080--Hb_000032_310 Hb_000105_020 Hb_000105_020 Hb_001172_080--Hb_000105_020 Hb_012565_080 Hb_012565_080 Hb_001172_080--Hb_012565_080 Hb_000521_170 Hb_000521_170 Hb_001172_080--Hb_000521_170 Hb_000120_970 Hb_000120_970 Hb_001172_080--Hb_000120_970 Hb_039894_010 Hb_039894_010 Hb_000445_300--Hb_039894_010 Hb_176368_010 Hb_176368_010 Hb_000445_300--Hb_176368_010 Hb_001529_060 Hb_001529_060 Hb_000445_300--Hb_001529_060 Hb_000504_090 Hb_000504_090 Hb_000445_300--Hb_000504_090 Hb_001009_290 Hb_001009_290 Hb_000445_300--Hb_001009_290 Hb_001522_010 Hb_001522_010 Hb_000445_300--Hb_001522_010 Hb_000032_310--Hb_000521_170 Hb_006185_020 Hb_006185_020 Hb_000032_310--Hb_006185_020 Hb_000808_070 Hb_000808_070 Hb_000032_310--Hb_000808_070 Hb_003157_010 Hb_003157_010 Hb_000032_310--Hb_003157_010 Hb_144824_010 Hb_144824_010 Hb_000032_310--Hb_144824_010 Hb_001989_020 Hb_001989_020 Hb_000032_310--Hb_001989_020 Hb_008948_160 Hb_008948_160 Hb_000105_020--Hb_008948_160 Hb_143986_010 Hb_143986_010 Hb_000105_020--Hb_143986_010 Hb_000105_030 Hb_000105_030 Hb_000105_020--Hb_000105_030 Hb_000162_020 Hb_000162_020 Hb_000105_020--Hb_000162_020 Hb_003604_040 Hb_003604_040 Hb_000105_020--Hb_003604_040 Hb_000046_180 Hb_000046_180 Hb_000105_020--Hb_000046_180 Hb_000789_240 Hb_000789_240 Hb_012565_080--Hb_000789_240 Hb_020178_060 Hb_020178_060 Hb_012565_080--Hb_020178_060 Hb_001416_020 Hb_001416_020 Hb_012565_080--Hb_001416_020 Hb_002827_020 Hb_002827_020 Hb_012565_080--Hb_002827_020 Hb_000283_150 Hb_000283_150 Hb_012565_080--Hb_000283_150 Hb_002016_040 Hb_002016_040 Hb_012565_080--Hb_002016_040 Hb_000640_130 Hb_000640_130 Hb_000521_170--Hb_000640_130 Hb_000521_170--Hb_001416_020 Hb_000932_070 Hb_000932_070 Hb_000521_170--Hb_000932_070 Hb_011828_030 Hb_011828_030 Hb_000521_170--Hb_011828_030 Hb_011671_230 Hb_011671_230 Hb_000521_170--Hb_011671_230 Hb_000107_560 Hb_000107_560 Hb_000120_970--Hb_000107_560 Hb_080451_010 Hb_080451_010 Hb_000120_970--Hb_080451_010 Hb_000120_970--Hb_000521_170 Hb_000120_970--Hb_011828_030 Hb_000120_970--Hb_020178_060 Hb_089100_040 Hb_089100_040 Hb_000120_970--Hb_089100_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0291954 0.0674901 0 0.00692208 0.0487259 0.0186803
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0174005 0 0.0484503 0.0367931

CAGE analysis