Hb_001172_090

Information

Type -
Description -
Location Contig1172: 181597-184723
Sequence    

Annotation

kegg
ID bvg:104885396
description uncharacterized LOC104885396
nr
ID XP_009599307.1
description PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
swissprot
ID -
description -
trembl
ID A0A061F1K1
description Retrotransposon-like protein OS=Theobroma cacao GN=TCM_022803 PE=4 SV=1
Gene Ontology
ID GO:0003676
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001172_090 0.0 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
2 Hb_010977_010 0.1969961803 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
3 Hb_162633_010 0.2402502077 - - hypothetical protein POPTR_0011s02600g [Populus trichocarpa]
4 Hb_019656_010 0.2444327164 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
5 Hb_000258_340 0.2506547667 - - PREDICTED: pentatricopeptide repeat-containing protein At1g26900, mitochondrial [Jatropha curcas]
6 Hb_086077_020 0.2644531587 - - hypothetical protein PHAVU_001G054900g [Phaseolus vulgaris]
7 Hb_131102_010 0.2832953898 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
8 Hb_002888_020 0.2883194791 - - -
9 Hb_133820_010 0.2901267067 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
10 Hb_004440_080 0.2994917945 - - PREDICTED: syntaxin-112 [Populus euphratica]
11 Hb_004734_050 0.3097763919 - - -
12 Hb_001450_010 0.3103418807 - - PREDICTED: uncharacterized protein LOC105436302 [Cucumis sativus]
13 Hb_005344_030 0.3126883532 - - PREDICTED: UDP-glycosyltransferase 74F2-like [Jatropha curcas]
14 Hb_000837_010 0.3136728382 - - PREDICTED: uncharacterized protein LOC104894399 [Beta vulgaris subsp. vulgaris]
15 Hb_181240_010 0.3213511992 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
16 Hb_150200_010 0.3218585457 - - PREDICTED: uncharacterized protein LOC105632410 [Jatropha curcas]
17 Hb_004714_020 0.3256990724 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
18 Hb_114874_010 0.3258670721 - - PREDICTED: uncharacterized protein LOC104226968, partial [Nicotiana sylvestris]
19 Hb_169780_010 0.328572132 - - PREDICTED: uncharacterized protein LOC104240691 [Nicotiana sylvestris]
20 Hb_006132_030 0.3294821942 - - hypothetical protein CARUB_v10012126mg, partial [Capsella rubella]

Gene co-expression network

sample Hb_001172_090 Hb_001172_090 Hb_010977_010 Hb_010977_010 Hb_001172_090--Hb_010977_010 Hb_162633_010 Hb_162633_010 Hb_001172_090--Hb_162633_010 Hb_019656_010 Hb_019656_010 Hb_001172_090--Hb_019656_010 Hb_000258_340 Hb_000258_340 Hb_001172_090--Hb_000258_340 Hb_086077_020 Hb_086077_020 Hb_001172_090--Hb_086077_020 Hb_131102_010 Hb_131102_010 Hb_001172_090--Hb_131102_010 Hb_010977_010--Hb_086077_020 Hb_004650_060 Hb_004650_060 Hb_010977_010--Hb_004650_060 Hb_010977_010--Hb_019656_010 Hb_004440_080 Hb_004440_080 Hb_010977_010--Hb_004440_080 Hb_133820_010 Hb_133820_010 Hb_010977_010--Hb_133820_010 Hb_169780_010 Hb_169780_010 Hb_162633_010--Hb_169780_010 Hb_034658_010 Hb_034658_010 Hb_162633_010--Hb_034658_010 Hb_002888_010 Hb_002888_010 Hb_162633_010--Hb_002888_010 Hb_007479_030 Hb_007479_030 Hb_162633_010--Hb_007479_030 Hb_162633_010--Hb_010977_010 Hb_043708_010 Hb_043708_010 Hb_019656_010--Hb_043708_010 Hb_019656_010--Hb_131102_010 Hb_019656_010--Hb_004650_060 Hb_019656_010--Hb_000258_340 Hb_000258_340--Hb_086077_020 Hb_000258_340--Hb_004440_080 Hb_005372_020 Hb_005372_020 Hb_000258_340--Hb_005372_020 Hb_000258_340--Hb_010977_010 Hb_086077_020--Hb_004440_080 Hb_000012_460 Hb_000012_460 Hb_086077_020--Hb_000012_460 Hb_000772_040 Hb_000772_040 Hb_086077_020--Hb_000772_040 Hb_086077_020--Hb_133820_010 Hb_131102_010--Hb_133820_010 Hb_131872_010 Hb_131872_010 Hb_131102_010--Hb_131872_010 Hb_131102_010--Hb_043708_010 Hb_001450_010 Hb_001450_010 Hb_131102_010--Hb_001450_010 Hb_131102_010--Hb_004650_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.0163708
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0610664 0.0160168 0.0304455 0.0127337 0.135751

CAGE analysis