Hb_001172_100

Information

Type -
Description -
Location Contig1172: 217599-218476
Sequence    

Annotation

kegg
ID pop:POPTR_0014s17760g
description POPTRDRAFT_732662; hypothetical protein
nr
ID XP_012083775.1
description PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3-like isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JYF8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14693 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05331: 216656-236666
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001172_100 0.0 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3-like isoform X1 [Jatropha curcas]
2 Hb_138585_040 0.0707761149 - - PREDICTED: proteasome subunit alpha type-4 [Jatropha curcas]
3 Hb_000384_120 0.0781173299 transcription factor TF Family: Whirly PREDICTED: single-stranded DNA-bindig protein WHY2, mitochondrial [Jatropha curcas]
4 Hb_002324_010 0.0783731036 - - PREDICTED: proteasome subunit alpha type-7 [Jatropha curcas]
5 Hb_001225_010 0.0820979567 - - unnamed protein product [Coffea canephora]
6 Hb_005045_070 0.0843889493 - - PREDICTED: deSI-like protein At4g17486 [Jatropha curcas]
7 Hb_001157_080 0.0851048465 - - zinc finger protein, putative [Ricinus communis]
8 Hb_000320_330 0.0915951689 - - uncharacterized protein LOC100527884 [Glycine max]
9 Hb_005278_040 0.0933115429 - - PREDICTED: sorcin-like isoform X1 [Populus euphratica]
10 Hb_072922_020 0.0950570058 - - SNARE-like superfamily protein [Theobroma cacao]
11 Hb_000302_280 0.0976251165 - - hypothetical protein ZEAMMB73_772347 [Zea mays]
12 Hb_000049_050 0.0988803986 - - PREDICTED: uncharacterized protein LOC105644474 [Jatropha curcas]
13 Hb_000707_020 0.1014269055 - - hypothetical protein B456_002G255500 [Gossypium raimondii]
14 Hb_000417_260 0.1025021589 - - protein with unknown function [Ricinus communis]
15 Hb_005463_140 0.1041057322 - - PREDICTED: histone deacetylase complex subunit SAP18 [Jatropha curcas]
16 Hb_152910_020 0.1059204927 - - PREDICTED: lactoylglutathione lyase-like [Jatropha curcas]
17 Hb_010402_050 0.1072832236 - - -
18 Hb_004659_060 0.1118663086 - - RAS-related GTP-binding family protein [Populus trichocarpa]
19 Hb_000115_230 0.1124954839 - - PREDICTED: cysteine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
20 Hb_120823_010 0.1142309409 - - -

Gene co-expression network

sample Hb_001172_100 Hb_001172_100 Hb_138585_040 Hb_138585_040 Hb_001172_100--Hb_138585_040 Hb_000384_120 Hb_000384_120 Hb_001172_100--Hb_000384_120 Hb_002324_010 Hb_002324_010 Hb_001172_100--Hb_002324_010 Hb_001225_010 Hb_001225_010 Hb_001172_100--Hb_001225_010 Hb_005045_070 Hb_005045_070 Hb_001172_100--Hb_005045_070 Hb_001157_080 Hb_001157_080 Hb_001172_100--Hb_001157_080 Hb_000049_050 Hb_000049_050 Hb_138585_040--Hb_000049_050 Hb_138585_040--Hb_002324_010 Hb_138585_040--Hb_000384_120 Hb_002631_260 Hb_002631_260 Hb_138585_040--Hb_002631_260 Hb_005278_040 Hb_005278_040 Hb_138585_040--Hb_005278_040 Hb_072922_020 Hb_072922_020 Hb_000384_120--Hb_072922_020 Hb_000417_260 Hb_000417_260 Hb_000384_120--Hb_000417_260 Hb_003880_030 Hb_003880_030 Hb_000384_120--Hb_003880_030 Hb_000922_040 Hb_000922_040 Hb_000384_120--Hb_000922_040 Hb_005269_080 Hb_005269_080 Hb_000384_120--Hb_005269_080 Hb_000384_120--Hb_002324_010 Hb_003376_190 Hb_003376_190 Hb_002324_010--Hb_003376_190 Hb_002324_010--Hb_005045_070 Hb_002324_010--Hb_072922_020 Hb_003020_330 Hb_003020_330 Hb_001225_010--Hb_003020_330 Hb_000110_170 Hb_000110_170 Hb_001225_010--Hb_000110_170 Hb_000203_020 Hb_000203_020 Hb_001225_010--Hb_000203_020 Hb_001449_090 Hb_001449_090 Hb_001225_010--Hb_001449_090 Hb_000878_020 Hb_000878_020 Hb_001225_010--Hb_000878_020 Hb_005045_070--Hb_072922_020 Hb_006452_040 Hb_006452_040 Hb_005045_070--Hb_006452_040 Hb_000087_130 Hb_000087_130 Hb_005045_070--Hb_000087_130 Hb_005045_070--Hb_003376_190 Hb_001157_080--Hb_138585_040 Hb_000302_280 Hb_000302_280 Hb_001157_080--Hb_000302_280 Hb_000707_020 Hb_000707_020 Hb_001157_080--Hb_000707_020 Hb_001157_080--Hb_000384_120 Hb_001157_080--Hb_000049_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.2388 3.97016 3.66899 16.9298 3.63555 6.44387
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.6274 42.9093 22.7602 9.40668 9.00216

CAGE analysis