Hb_001172_120

Information

Type -
Description -
Location Contig1172: 226394-236663
Sequence    

Annotation

kegg
ID rcu:RCOM_0659200
description hypothetical protein
nr
ID KJB74588.1
description hypothetical protein B456_012G082000 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0D2TFR8
description Gossypium raimondii chromosome 12, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_012G082000 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05331: 216656-236666
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001172_120 0.0 - - hypothetical protein B456_012G082000 [Gossypium raimondii]
2 Hb_000069_700 0.067656871 - - hypothetical protein B456_005G003200 [Gossypium raimondii]
3 Hb_007192_100 0.0735828123 - - PREDICTED: protein DEHYDRATION-INDUCED 19 homolog 6-like [Jatropha curcas]
4 Hb_007037_020 0.0765670434 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 78 [Jatropha curcas]
5 Hb_000115_230 0.0769655364 - - PREDICTED: cysteine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
6 Hb_001235_110 0.0875826836 - - PREDICTED: vesicle-associated protein 1-2-like [Jatropha curcas]
7 Hb_011021_040 0.0887009988 transcription factor TF Family: Trihelix PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH9 [Jatropha curcas]
8 Hb_015807_100 0.0911418861 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
9 Hb_006478_160 0.0940050262 - - 20S proteasome beta subunit D1 [Hevea brasiliensis]
10 Hb_001314_040 0.0951758106 - - hypothetical protein POPTR_0011s10470g [Populus trichocarpa]
11 Hb_013399_050 0.0953900189 - - PREDICTED: vacuolar protein sorting-associated protein 2 homolog 1-like isoform X2 [Jatropha curcas]
12 Hb_000567_410 0.0965777511 - - hypothetical protein JCGZ_12784 [Jatropha curcas]
13 Hb_003783_030 0.0975495029 - - hypothetical protein POPTR_0018s13980g [Populus trichocarpa]
14 Hb_013405_140 0.0977414913 - - PREDICTED: uncharacterized protein LOC105648437 [Jatropha curcas]
15 Hb_000997_190 0.1041576875 - - PREDICTED: magnesium transporter MRS2-I-like [Jatropha curcas]
16 Hb_001633_030 0.1053912825 - - -
17 Hb_000384_120 0.1053953579 transcription factor TF Family: Whirly PREDICTED: single-stranded DNA-bindig protein WHY2, mitochondrial [Jatropha curcas]
18 Hb_000392_380 0.1058017382 - - ubiquitin-conjugating enzyme [Medicago truncatula]
19 Hb_001726_040 0.1080622635 - - hypothetical protein CICLE_v10029230mg [Citrus clementina]
20 Hb_152910_020 0.1088426985 - - PREDICTED: lactoylglutathione lyase-like [Jatropha curcas]

Gene co-expression network

sample Hb_001172_120 Hb_001172_120 Hb_000069_700 Hb_000069_700 Hb_001172_120--Hb_000069_700 Hb_007192_100 Hb_007192_100 Hb_001172_120--Hb_007192_100 Hb_007037_020 Hb_007037_020 Hb_001172_120--Hb_007037_020 Hb_000115_230 Hb_000115_230 Hb_001172_120--Hb_000115_230 Hb_001235_110 Hb_001235_110 Hb_001172_120--Hb_001235_110 Hb_011021_040 Hb_011021_040 Hb_001172_120--Hb_011021_040 Hb_000069_700--Hb_001235_110 Hb_001726_040 Hb_001726_040 Hb_000069_700--Hb_001726_040 Hb_001633_030 Hb_001633_030 Hb_000069_700--Hb_001633_030 Hb_000069_700--Hb_007192_100 Hb_000567_410 Hb_000567_410 Hb_000069_700--Hb_000567_410 Hb_001005_080 Hb_001005_080 Hb_007192_100--Hb_001005_080 Hb_015807_100 Hb_015807_100 Hb_007192_100--Hb_015807_100 Hb_007192_100--Hb_000115_230 Hb_152910_020 Hb_152910_020 Hb_007192_100--Hb_152910_020 Hb_000384_120 Hb_000384_120 Hb_007192_100--Hb_000384_120 Hb_007037_020--Hb_011021_040 Hb_013405_140 Hb_013405_140 Hb_007037_020--Hb_013405_140 Hb_013399_050 Hb_013399_050 Hb_007037_020--Hb_013399_050 Hb_002016_080 Hb_002016_080 Hb_007037_020--Hb_002016_080 Hb_011485_020 Hb_011485_020 Hb_007037_020--Hb_011485_020 Hb_000239_030 Hb_000239_030 Hb_000115_230--Hb_000239_030 Hb_000115_230--Hb_015807_100 Hb_002374_390 Hb_002374_390 Hb_000115_230--Hb_002374_390 Hb_000392_380 Hb_000392_380 Hb_000115_230--Hb_000392_380 Hb_000330_070 Hb_000330_070 Hb_001235_110--Hb_000330_070 Hb_000802_100 Hb_000802_100 Hb_001235_110--Hb_000802_100 Hb_116349_110 Hb_116349_110 Hb_001235_110--Hb_116349_110 Hb_000975_320 Hb_000975_320 Hb_001235_110--Hb_000975_320 Hb_011021_040--Hb_013399_050 Hb_011021_040--Hb_013405_140 Hb_000175_030 Hb_000175_030 Hb_011021_040--Hb_000175_030 Hb_011021_040--Hb_002016_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.10786 7.5574 8.32624 9.37729 4.37695 4.90428
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.3195 36.827 24.4182 7.49042 7.27714

CAGE analysis