Hb_001172_140

Information

Type -
Description -
Location Contig1172: 269557-273127
Sequence    

Annotation

kegg
ID pop:POPTR_0014s17790g
description POPTRDRAFT_824422; hypothetical protein
nr
ID XP_002320581.1
description hypothetical protein POPTR_0014s17790g [Populus trichocarpa]
swissprot
ID O22466
description WD-40 repeat-containing protein MSI1 OS=Solanum lycopersicum GN=MSI1 PE=2 SV=1
trembl
ID B9IB49
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s17790g PE=4 SV=1
Gene Ontology
ID GO:0005515
description wd-40 repeat-containing protein msi1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05333: 270901-271409 , PASA_asmbl_05334: 270902-271686
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001172_140 0.0 - - hypothetical protein POPTR_0014s17790g [Populus trichocarpa]
2 Hb_000809_180 0.1404373982 - - -
3 Hb_003839_010 0.1515726514 - - PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Elaeis guineensis]
4 Hb_010029_020 0.1596326714 - - PREDICTED: serine/threonine-protein kinase CTR1 [Jatropha curcas]
5 Hb_011909_010 0.1814419282 - - PREDICTED: uncharacterized protein LOC100246941 [Vitis vinifera]
6 Hb_158445_020 0.1818749694 - - conserved hypothetical protein [Ricinus communis]
7 Hb_004411_030 0.1891485212 - - hypothetical protein POPTR_0017s00310g [Populus trichocarpa]
8 Hb_000352_260 0.1894141307 - - PREDICTED: WD repeat-containing protein LWD1 [Jatropha curcas]
9 Hb_172112_020 0.1900048404 - - PREDICTED: fumarylacetoacetase [Jatropha curcas]
10 Hb_001006_340 0.1905730814 - - PREDICTED: sodium/hydrogen exchanger 7-like [Malus domestica]
11 Hb_000559_070 0.1907175563 - - calcineurin B, putative [Ricinus communis]
12 Hb_000455_130 0.1954304239 - - PREDICTED: aspartic proteinase A1-like isoform X1 [Jatropha curcas]
13 Hb_003266_020 0.1971933144 - - PREDICTED: protein trichome birefringence-like 11 [Jatropha curcas]
14 Hb_000139_070 0.1983079218 - - PREDICTED: probable linoleate 9S-lipoxygenase 5 [Jatropha curcas]
15 Hb_001009_280 0.2019987258 - - PREDICTED: telomere length regulation protein TEL2 homolog [Jatropha curcas]
16 Hb_006816_280 0.202380053 - - PREDICTED: uncharacterized protein LOC105647448 isoform X2 [Jatropha curcas]
17 Hb_001754_040 0.203603853 transcription factor TF Family: TRAF PREDICTED: uncharacterized protein LOC105643434 [Jatropha curcas]
18 Hb_088144_020 0.2038587698 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 6-like isoform X1 [Jatropha curcas]
19 Hb_000009_120 0.2046110832 - - PREDICTED: probable Xaa-Pro aminopeptidase P isoform X1 [Jatropha curcas]
20 Hb_004236_010 0.2049791281 - - PREDICTED: probable mitochondrial-processing peptidase subunit beta [Jatropha curcas]

Gene co-expression network

sample Hb_001172_140 Hb_001172_140 Hb_000809_180 Hb_000809_180 Hb_001172_140--Hb_000809_180 Hb_003839_010 Hb_003839_010 Hb_001172_140--Hb_003839_010 Hb_010029_020 Hb_010029_020 Hb_001172_140--Hb_010029_020 Hb_011909_010 Hb_011909_010 Hb_001172_140--Hb_011909_010 Hb_158445_020 Hb_158445_020 Hb_001172_140--Hb_158445_020 Hb_004411_030 Hb_004411_030 Hb_001172_140--Hb_004411_030 Hb_000823_030 Hb_000823_030 Hb_000809_180--Hb_000823_030 Hb_001953_120 Hb_001953_120 Hb_000809_180--Hb_001953_120 Hb_004236_010 Hb_004236_010 Hb_000809_180--Hb_004236_010 Hb_088144_020 Hb_088144_020 Hb_000809_180--Hb_088144_020 Hb_004032_040 Hb_004032_040 Hb_000809_180--Hb_004032_040 Hb_001006_340 Hb_001006_340 Hb_000809_180--Hb_001006_340 Hb_003839_010--Hb_158445_020 Hb_001279_170 Hb_001279_170 Hb_003839_010--Hb_001279_170 Hb_004787_080 Hb_004787_080 Hb_003839_010--Hb_004787_080 Hb_000321_140 Hb_000321_140 Hb_003839_010--Hb_000321_140 Hb_029388_010 Hb_029388_010 Hb_003839_010--Hb_029388_010 Hb_001009_280 Hb_001009_280 Hb_003839_010--Hb_001009_280 Hb_008864_090 Hb_008864_090 Hb_010029_020--Hb_008864_090 Hb_001427_070 Hb_001427_070 Hb_010029_020--Hb_001427_070 Hb_134469_010 Hb_134469_010 Hb_010029_020--Hb_134469_010 Hb_001004_110 Hb_001004_110 Hb_010029_020--Hb_001004_110 Hb_007904_130 Hb_007904_130 Hb_010029_020--Hb_007904_130 Hb_010021_010 Hb_010021_010 Hb_010029_020--Hb_010021_010 Hb_000345_320 Hb_000345_320 Hb_011909_010--Hb_000345_320 Hb_000317_350 Hb_000317_350 Hb_011909_010--Hb_000317_350 Hb_000209_100 Hb_000209_100 Hb_011909_010--Hb_000209_100 Hb_082741_010 Hb_082741_010 Hb_011909_010--Hb_082741_010 Hb_000205_250 Hb_000205_250 Hb_011909_010--Hb_000205_250 Hb_028811_010 Hb_028811_010 Hb_011909_010--Hb_028811_010 Hb_008054_040 Hb_008054_040 Hb_158445_020--Hb_008054_040 Hb_001396_010 Hb_001396_010 Hb_158445_020--Hb_001396_010 Hb_000229_050 Hb_000229_050 Hb_158445_020--Hb_000229_050 Hb_016734_020 Hb_016734_020 Hb_158445_020--Hb_016734_020 Hb_002107_100 Hb_002107_100 Hb_158445_020--Hb_002107_100 Hb_041327_010 Hb_041327_010 Hb_004411_030--Hb_041327_010 Hb_000037_220 Hb_000037_220 Hb_004411_030--Hb_000037_220 Hb_001754_040 Hb_001754_040 Hb_004411_030--Hb_001754_040 Hb_140049_080 Hb_140049_080 Hb_004411_030--Hb_140049_080 Hb_000003_100 Hb_000003_100 Hb_004411_030--Hb_000003_100 Hb_019840_030 Hb_019840_030 Hb_004411_030--Hb_019840_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.15517 1.17183 1.40315 0.357184 0.68255 0.30177
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.284092 0.223534 1.27265 2.36631 0.763764

CAGE analysis