Hb_001172_150

Information

Type desease resistance
Description Gene Name: ABC_membrane
Location Contig1172: 274327-282046
Sequence    

Annotation

kegg
ID tcc:TCM_042344
description Multidrug resistance protein ABC transporter family
nr
ID XP_012083772.1
description PREDICTED: putative ABC transporter C family member 15 [Jatropha curcas]
swissprot
ID Q9M1C7
description ABC transporter C family member 9 OS=Arabidopsis thaliana GN=ABCC9 PE=2 SV=2
trembl
ID A0A067KAS0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14690 PE=3 SV=1
Gene Ontology
ID GO:0016021
description abc transporter c family member 15 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05335: 274368-281994 , PASA_asmbl_05336: 277172-277467 , PASA_asmbl_05337: 275870-276637
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001172_150 0.0 desease resistance Gene Name: ABC_membrane PREDICTED: putative ABC transporter C family member 15 [Jatropha curcas]
2 Hb_000697_020 0.0892962513 - - Zinc-binding dehydrogenase family protein isoform 1 [Theobroma cacao]
3 Hb_003119_130 0.0992631085 - - hypothetical protein POPTR_0017s07770g [Populus trichocarpa]
4 Hb_008878_020 0.0994992077 - - PREDICTED: aldehyde dehydrogenase family 3 member H1-like [Populus euphratica]
5 Hb_000212_270 0.1008197418 - - calreticulin, putative [Ricinus communis]
6 Hb_061126_010 0.1036068638 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
7 Hb_000705_010 0.1114604915 - - hypothetical protein CICLE_v10027296mg [Citrus clementina]
8 Hb_002030_090 0.1119681424 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
9 Hb_016687_010 0.1129595754 - - PREDICTED: uncharacterized protein LOC105637401 [Jatropha curcas]
10 Hb_000175_200 0.1148869405 - - conserved hypothetical protein [Ricinus communis]
11 Hb_003453_060 0.1213471376 - - PREDICTED: nudix hydrolase 13, mitochondrial [Jatropha curcas]
12 Hb_000968_010 0.1226797915 - - PREDICTED: glutamate receptor 3.7 isoform X1 [Jatropha curcas]
13 Hb_003337_020 0.1231235064 - - PREDICTED: uncharacterized protein LOC105116455 [Populus euphratica]
14 Hb_004109_270 0.1233818735 transcription factor TF Family: NAC transcription activator NAC1 family protein [Populus trichocarpa]
15 Hb_063405_010 0.1243580697 - - PREDICTED: probable terpene synthase 3 [Jatropha curcas]
16 Hb_004374_100 0.1252149068 - - PREDICTED: phosphoglycerate mutase-like protein AT74H [Jatropha curcas]
17 Hb_078582_010 0.1254010071 - - hypothetical protein POPTR_0005s01620g [Populus trichocarpa]
18 Hb_000252_240 0.1297605855 - - PREDICTED: protein TRANSPARENT TESTA 12-like isoform X2 [Gossypium raimondii]
19 Hb_000483_430 0.1311890804 - - -
20 Hb_001508_030 0.132360805 - - hypothetical protein VITISV_029808 [Vitis vinifera]

Gene co-expression network

sample Hb_001172_150 Hb_001172_150 Hb_000697_020 Hb_000697_020 Hb_001172_150--Hb_000697_020 Hb_003119_130 Hb_003119_130 Hb_001172_150--Hb_003119_130 Hb_008878_020 Hb_008878_020 Hb_001172_150--Hb_008878_020 Hb_000212_270 Hb_000212_270 Hb_001172_150--Hb_000212_270 Hb_061126_010 Hb_061126_010 Hb_001172_150--Hb_061126_010 Hb_000705_010 Hb_000705_010 Hb_001172_150--Hb_000705_010 Hb_000697_020--Hb_061126_010 Hb_016687_010 Hb_016687_010 Hb_000697_020--Hb_016687_010 Hb_000697_020--Hb_000212_270 Hb_063405_010 Hb_063405_010 Hb_000697_020--Hb_063405_010 Hb_000697_020--Hb_000705_010 Hb_078582_010 Hb_078582_010 Hb_003119_130--Hb_078582_010 Hb_003119_130--Hb_016687_010 Hb_003453_060 Hb_003453_060 Hb_003119_130--Hb_003453_060 Hb_000175_200 Hb_000175_200 Hb_003119_130--Hb_000175_200 Hb_005575_010 Hb_005575_010 Hb_003119_130--Hb_005575_010 Hb_008878_020--Hb_000212_270 Hb_002030_090 Hb_002030_090 Hb_008878_020--Hb_002030_090 Hb_008878_020--Hb_000697_020 Hb_001266_130 Hb_001266_130 Hb_008878_020--Hb_001266_130 Hb_006478_050 Hb_006478_050 Hb_008878_020--Hb_006478_050 Hb_000212_270--Hb_000175_200 Hb_001898_100 Hb_001898_100 Hb_000212_270--Hb_001898_100 Hb_000212_270--Hb_003119_130 Hb_000120_490 Hb_000120_490 Hb_061126_010--Hb_000120_490 Hb_061126_010--Hb_000705_010 Hb_061126_010--Hb_063405_010 Hb_002010_030 Hb_002010_030 Hb_061126_010--Hb_002010_030 Hb_000705_010--Hb_063405_010 Hb_080922_010 Hb_080922_010 Hb_000705_010--Hb_080922_010 Hb_000270_090 Hb_000270_090 Hb_000705_010--Hb_000270_090 Hb_001321_010 Hb_001321_010 Hb_000705_010--Hb_001321_010 Hb_000705_010--Hb_002010_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.114488 6.31759 22.6632 4.47905 0.101022 0.0162937
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0761186 0.106498 0.320422 4.72793 23.8023

CAGE analysis