Hb_001173_040

Information

Type -
Description -
Location Contig1173: 147328-158944
Sequence    

Annotation

kegg
ID rcu:RCOM_0657260
description tryptophanyl-tRNA synthetase, putative (EC:6.1.1.2)
nr
ID XP_012066271.1
description PREDICTED: tryptophan--tRNA ligase, cytoplasmic [Jatropha curcas]
swissprot
ID P23381
description Tryptophan--tRNA ligase, cytoplasmic OS=Homo sapiens GN=WARS PE=1 SV=2
trembl
ID A0A067LFL2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23836 PE=3 SV=1
Gene Ontology
ID GO:0005737
description tryptophan--trna cytoplasmic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05343: 147827-158776 , PASA_asmbl_05344: 147857-158897
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001173_040 0.0 - - PREDICTED: tryptophan--tRNA ligase, cytoplasmic [Jatropha curcas]
2 Hb_002539_090 0.0779014351 - - PREDICTED: uncharacterized protein LOC103489178 [Cucumis melo]
3 Hb_001258_080 0.083808813 - - PREDICTED: uncharacterized protein LOC105639921 [Jatropha curcas]
4 Hb_002028_130 0.0850174416 - - PREDICTED: MHC class II regulatory factor RFX1-like [Jatropha curcas]
5 Hb_000172_030 0.0945432548 - - PREDICTED: protein SCO1 homolog 2, mitochondrial [Jatropha curcas]
6 Hb_000751_130 0.0972831011 - - PREDICTED: mitochondrial import inner membrane translocase subunit tim16 [Jatropha curcas]
7 Hb_001008_010 0.0974291213 - - PREDICTED: 30S ribosomal protein S17, chloroplastic-like [Populus euphratica]
8 Hb_002471_080 0.0986442201 - - oxidoreductase, putative [Ricinus communis]
9 Hb_100777_010 0.1026698382 - - PREDICTED: mediator of RNA polymerase II transcription subunit 19a-like [Populus euphratica]
10 Hb_001829_060 0.1035224459 - - Eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]
11 Hb_001357_080 0.1041922356 - - hypothetical protein POPTR_0005s15590g [Populus trichocarpa]
12 Hb_000046_110 0.1067400309 - - PREDICTED: 54S ribosomal protein L39, mitochondrial [Jatropha curcas]
13 Hb_001718_100 0.1077002902 - - PREDICTED: casein kinase II subunit beta-like isoform X5 [Jatropha curcas]
14 Hb_001862_100 0.1078768695 - - PREDICTED: uncharacterized protein LOC105639799 isoform X2 [Jatropha curcas]
15 Hb_001811_020 0.1110180014 - - conserved hypothetical protein [Ricinus communis]
16 Hb_011671_220 0.1112731599 - - conserved hypothetical protein [Ricinus communis]
17 Hb_010812_010 0.1131843132 - - hypothetical protein JCGZ_03306 [Jatropha curcas]
18 Hb_007594_090 0.1135826929 - - PREDICTED: histone deacetylase complex subunit SAP18 [Jatropha curcas]
19 Hb_010436_060 0.1149396094 - - hypothetical protein CISIN_1g0003801mg, partial [Citrus sinensis]
20 Hb_001427_230 0.1152150267 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001173_040 Hb_001173_040 Hb_002539_090 Hb_002539_090 Hb_001173_040--Hb_002539_090 Hb_001258_080 Hb_001258_080 Hb_001173_040--Hb_001258_080 Hb_002028_130 Hb_002028_130 Hb_001173_040--Hb_002028_130 Hb_000172_030 Hb_000172_030 Hb_001173_040--Hb_000172_030 Hb_000751_130 Hb_000751_130 Hb_001173_040--Hb_000751_130 Hb_001008_010 Hb_001008_010 Hb_001173_040--Hb_001008_010 Hb_002539_090--Hb_001258_080 Hb_002539_090--Hb_000751_130 Hb_007594_090 Hb_007594_090 Hb_002539_090--Hb_007594_090 Hb_001357_080 Hb_001357_080 Hb_002539_090--Hb_001357_080 Hb_002539_090--Hb_000172_030 Hb_000046_110 Hb_000046_110 Hb_001258_080--Hb_000046_110 Hb_001811_020 Hb_001811_020 Hb_001258_080--Hb_001811_020 Hb_001718_100 Hb_001718_100 Hb_001258_080--Hb_001718_100 Hb_001829_060 Hb_001829_060 Hb_001258_080--Hb_001829_060 Hb_002028_130--Hb_001718_100 Hb_002716_070 Hb_002716_070 Hb_002028_130--Hb_002716_070 Hb_002078_460 Hb_002078_460 Hb_002028_130--Hb_002078_460 Hb_001616_060 Hb_001616_060 Hb_002028_130--Hb_001616_060 Hb_000030_100 Hb_000030_100 Hb_002028_130--Hb_000030_100 Hb_001862_100 Hb_001862_100 Hb_002028_130--Hb_001862_100 Hb_000787_140 Hb_000787_140 Hb_000172_030--Hb_000787_140 Hb_000172_030--Hb_000751_130 Hb_000087_020 Hb_000087_020 Hb_000172_030--Hb_000087_020 Hb_180301_010 Hb_180301_010 Hb_000172_030--Hb_180301_010 Hb_008544_010 Hb_008544_010 Hb_000172_030--Hb_008544_010 Hb_001437_230 Hb_001437_230 Hb_000172_030--Hb_001437_230 Hb_000751_130--Hb_001829_060 Hb_000274_020 Hb_000274_020 Hb_000751_130--Hb_000274_020 Hb_000751_130--Hb_000087_020 Hb_004032_100 Hb_004032_100 Hb_000751_130--Hb_004032_100 Hb_000751_130--Hb_000046_110 Hb_001629_100 Hb_001629_100 Hb_001008_010--Hb_001629_100 Hb_012265_010 Hb_012265_010 Hb_001008_010--Hb_012265_010 Hb_010172_030 Hb_010172_030 Hb_001008_010--Hb_010172_030 Hb_001008_010--Hb_002539_090 Hb_001754_010 Hb_001754_010 Hb_001008_010--Hb_001754_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
29.7054 3.55752 6.754 20.384 39.0127 86.4287
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
104.113 99.4543 99.9123 31.4599 20.2299

CAGE analysis