Hb_001173_050

Information

Type -
Description -
Location Contig1173: 171035-171775
Sequence    

Annotation

kegg
ID rcu:RCOM_1548470
description DUF26 domain-containing protein 2 precursor, putative
nr
ID XP_002515716.1
description DUF26 domain-containing protein 2 precursor, putative [Ricinus communis]
swissprot
ID Q9LRJ9
description Cysteine-rich repeat secretory protein 38 OS=Arabidopsis thaliana GN=CRRSP38 PE=2 SV=1
trembl
ID B9RPP7
description DUF26 domain-containing protein 2, putative OS=Ricinus communis GN=RCOM_1548470 PE=4 SV=1
Gene Ontology
ID GO:0016301
description cysteine-rich repeat secretory protein 38-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001173_050 0.0 - - DUF26 domain-containing protein 2 precursor, putative [Ricinus communis]
2 Hb_011856_010 0.0460398378 - - cytochrome P450, putative [Ricinus communis]
3 Hb_025526_090 0.0536254553 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 [Jatropha curcas]
4 Hb_139460_010 0.0657086694 - - PREDICTED: beta-glucosidase 18-like [Jatropha curcas]
5 Hb_004185_040 0.0694217011 - - polygalacturonase, putative [Ricinus communis]
6 Hb_000567_310 0.0745689368 - - Miraculin precursor, putative [Ricinus communis]
7 Hb_001328_110 0.0834272375 - - PREDICTED: LON peptidase N-terminal domain and RING finger protein 1-like [Jatropha curcas]
8 Hb_003052_070 0.0850471758 - - PREDICTED: peroxidase 11 [Jatropha curcas]
9 Hb_041769_010 0.0854341316 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
10 Hb_000813_120 0.0870171084 - - PREDICTED: serine carboxypeptidase-like 18 [Tarenaya hassleriana]
11 Hb_004195_040 0.0871757782 - - salicylic acid methyl transferase [Capsicum annuum]
12 Hb_008705_070 0.0882367616 - - PREDICTED: uncharacterized protein LOC105638774 [Jatropha curcas]
13 Hb_011824_010 0.0903627955 - - Metalloendoproteinase 1 precursor, putative [Ricinus communis]
14 Hb_059162_010 0.0941721113 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
15 Hb_000003_470 0.0957967275 - - conserved hypothetical protein [Ricinus communis]
16 Hb_016172_010 0.0977191778 - - hypothetical protein JCGZ_23602 [Jatropha curcas]
17 Hb_027288_010 0.1010255739 - - mutt domain protein, putative [Ricinus communis]
18 Hb_012019_030 0.1029797152 - - hypothetical protein POPTR_0005s23360g [Populus trichocarpa]
19 Hb_122574_020 0.1034020525 - - hypothetical protein JCGZ_24076 [Jatropha curcas]
20 Hb_039342_030 0.1038235651 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001173_050 Hb_001173_050 Hb_011856_010 Hb_011856_010 Hb_001173_050--Hb_011856_010 Hb_025526_090 Hb_025526_090 Hb_001173_050--Hb_025526_090 Hb_139460_010 Hb_139460_010 Hb_001173_050--Hb_139460_010 Hb_004185_040 Hb_004185_040 Hb_001173_050--Hb_004185_040 Hb_000567_310 Hb_000567_310 Hb_001173_050--Hb_000567_310 Hb_001328_110 Hb_001328_110 Hb_001173_050--Hb_001328_110 Hb_011856_010--Hb_139460_010 Hb_011856_010--Hb_025526_090 Hb_011824_010 Hb_011824_010 Hb_011856_010--Hb_011824_010 Hb_002615_050 Hb_002615_050 Hb_011856_010--Hb_002615_050 Hb_011856_010--Hb_004185_040 Hb_000003_470 Hb_000003_470 Hb_025526_090--Hb_000003_470 Hb_025526_090--Hb_001328_110 Hb_016172_010 Hb_016172_010 Hb_025526_090--Hb_016172_010 Hb_008705_070 Hb_008705_070 Hb_025526_090--Hb_008705_070 Hb_139460_010--Hb_011824_010 Hb_139460_010--Hb_002615_050 Hb_000160_230 Hb_000160_230 Hb_139460_010--Hb_000160_230 Hb_007810_140 Hb_007810_140 Hb_139460_010--Hb_007810_140 Hb_004195_040 Hb_004195_040 Hb_004185_040--Hb_004195_040 Hb_012019_030 Hb_012019_030 Hb_004185_040--Hb_012019_030 Hb_004185_040--Hb_139460_010 Hb_000813_120 Hb_000813_120 Hb_004185_040--Hb_000813_120 Hb_003052_070 Hb_003052_070 Hb_000567_310--Hb_003052_070 Hb_006538_050 Hb_006538_050 Hb_000567_310--Hb_006538_050 Hb_000567_310--Hb_001328_110 Hb_027288_010 Hb_027288_010 Hb_000567_310--Hb_027288_010 Hb_003786_060 Hb_003786_060 Hb_000567_310--Hb_003786_060 Hb_001328_110--Hb_008705_070 Hb_001328_110--Hb_003052_070 Hb_001328_110--Hb_006538_050 Hb_000120_710 Hb_000120_710 Hb_001328_110--Hb_000120_710
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 6.41381 0.774068 1.84999 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 28.6717 0

CAGE analysis