Hb_001174_020

Information

Type -
Description -
Location Contig1174: 22694-22975
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001174_020 0.0 - - -
2 Hb_002808_010 0.1014634529 - - cinnamoyl-CoA reductase [Hevea brasiliensis]
3 Hb_179138_010 0.1286601108 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
4 Hb_003212_020 0.1319025288 - - hypothetical protein PHAVU_009G114800g [Phaseolus vulgaris]
5 Hb_000705_050 0.136119554 - - PREDICTED: uncharacterized protein C167.05 [Vitis vinifera]
6 Hb_000011_320 0.1446580421 - - PREDICTED: uncharacterized protein LOC105631328 [Jatropha curcas]
7 Hb_003304_090 0.1479135033 - - PREDICTED: uncharacterized protein LOC105633680 [Jatropha curcas]
8 Hb_159809_080 0.1486419901 - - multidrug resistance pump, putative [Ricinus communis]
9 Hb_003983_010 0.171315927 - - serine/threonine-protein kinase bri1, putative [Ricinus communis]
10 Hb_001675_020 0.1728075911 - - -
11 Hb_002053_170 0.1740358264 - - cytochrome P450, putative [Ricinus communis]
12 Hb_000685_100 0.1863597491 - - hypothetical protein POPTR_0001s10630g [Populus trichocarpa]
13 Hb_113945_010 0.1903181367 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
14 Hb_005116_040 0.1929469521 - - PREDICTED: uncharacterized protein LOC105131445 [Populus euphratica]
15 Hb_000106_060 0.1931224873 - - PREDICTED: uncharacterized protein LOC105636580 [Jatropha curcas]
16 Hb_004893_010 0.1935231801 - - PREDICTED: O-acyltransferase WSD1-like [Jatropha curcas]
17 Hb_008304_050 0.1937372634 - - PREDICTED: trans-cinnamate 4-monooxygenase [Jatropha curcas]
18 Hb_025161_060 0.1948923306 - - hypothetical protein JCGZ_23770 [Jatropha curcas]
19 Hb_000934_180 0.1974426454 - - hypothetical protein JCGZ_25237 [Jatropha curcas]
20 Hb_116194_010 0.1975695749 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]

Gene co-expression network

sample Hb_001174_020 Hb_001174_020 Hb_002808_010 Hb_002808_010 Hb_001174_020--Hb_002808_010 Hb_179138_010 Hb_179138_010 Hb_001174_020--Hb_179138_010 Hb_003212_020 Hb_003212_020 Hb_001174_020--Hb_003212_020 Hb_000705_050 Hb_000705_050 Hb_001174_020--Hb_000705_050 Hb_000011_320 Hb_000011_320 Hb_001174_020--Hb_000011_320 Hb_003304_090 Hb_003304_090 Hb_001174_020--Hb_003304_090 Hb_002053_170 Hb_002053_170 Hb_002808_010--Hb_002053_170 Hb_000046_390 Hb_000046_390 Hb_002808_010--Hb_000046_390 Hb_025161_060 Hb_025161_060 Hb_002808_010--Hb_025161_060 Hb_005116_040 Hb_005116_040 Hb_002808_010--Hb_005116_040 Hb_001019_030 Hb_001019_030 Hb_002808_010--Hb_001019_030 Hb_003983_010 Hb_003983_010 Hb_179138_010--Hb_003983_010 Hb_159809_080 Hb_159809_080 Hb_179138_010--Hb_159809_080 Hb_179138_010--Hb_000011_320 Hb_011849_020 Hb_011849_020 Hb_179138_010--Hb_011849_020 Hb_008304_050 Hb_008304_050 Hb_179138_010--Hb_008304_050 Hb_003212_020--Hb_000705_050 Hb_003212_020--Hb_003304_090 Hb_001675_020 Hb_001675_020 Hb_003212_020--Hb_001675_020 Hb_003212_020--Hb_000011_320 Hb_000477_020 Hb_000477_020 Hb_003212_020--Hb_000477_020 Hb_000705_050--Hb_003304_090 Hb_034688_030 Hb_034688_030 Hb_000705_050--Hb_034688_030 Hb_000705_050--Hb_000011_320 Hb_000563_410 Hb_000563_410 Hb_000705_050--Hb_000563_410 Hb_000011_320--Hb_003304_090 Hb_000561_040 Hb_000561_040 Hb_000011_320--Hb_000561_040 Hb_000011_320--Hb_008304_050 Hb_000389_100 Hb_000389_100 Hb_000011_320--Hb_000389_100 Hb_004893_010 Hb_004893_010 Hb_000011_320--Hb_004893_010 Hb_003304_090--Hb_004893_010 Hb_003304_090--Hb_001675_020 Hb_000659_050 Hb_000659_050 Hb_003304_090--Hb_000659_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.382547 0 3.60252 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.36197 1.07187

CAGE analysis