Hb_001174_030

Information

Type -
Description -
Location Contig1174: 23015-24634
Sequence    

Annotation

kegg
ID cit:102622520
description uncharacterized LOC102622520
nr
ID CBI16545.3
description unnamed protein product [Vitis vinifera]
swissprot
ID Q9FIZ3
description LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2
trembl
ID D7SLL7
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g00370 PE=4 SV=1
Gene Ontology
ID GO:0007165
description lrr receptor-like serine threonine-protein kinase fls2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001174_030 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_001544_070 0.0647250874 - - PREDICTED: multicopper oxidase LPR1 [Jatropha curcas]
3 Hb_001706_020 0.0740886786 - - PREDICTED: organic cation/carnitine transporter 7 [Jatropha curcas]
4 Hb_005034_010 0.0743980907 - - alcohol dehydrogenase, putative [Ricinus communis]
5 Hb_174101_010 0.0763948951 - - PREDICTED: receptor-like protein 12 [Populus euphratica]
6 Hb_000472_020 0.0770914922 - - PREDICTED: uncharacterized protein LOC105641103 [Jatropha curcas]
7 Hb_003562_040 0.0792933542 - - PREDICTED: septum-promoting GTP-binding protein 1-like [Jatropha curcas]
8 Hb_006269_010 0.0845355901 - - hypothetical protein JCGZ_21552 [Jatropha curcas]
9 Hb_001153_090 0.0918796756 - - PREDICTED: protein FAM63A [Jatropha curcas]
10 Hb_144703_010 0.0940676048 - - Phospholipase A 2A, IIA,PLA2A [Theobroma cacao]
11 Hb_019496_040 0.0942744568 - - kinase family protein [Populus trichocarpa]
12 Hb_000614_190 0.0965108765 desease resistance Gene Name: ABC_membrane PREDICTED: putative ABC transporter C family member 15 [Jatropha curcas]
13 Hb_000215_290 0.0965744301 transcription factor TF Family: NAC PREDICTED: protein BEARSKIN2 isoform X2 [Jatropha curcas]
14 Hb_026144_030 0.1019114166 - - PREDICTED: high affinity nitrate transporter 2.5 [Jatropha curcas]
15 Hb_005054_280 0.1021801213 transcription factor TF Family: HB Protein WUSCHEL, putative [Ricinus communis]
16 Hb_001956_080 0.1109698767 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 14 [Jatropha curcas]
17 Hb_000477_110 0.1117733102 transcription factor TF Family: GRAS PREDICTED: DELLA protein SLR1-like [Jatropha curcas]
18 Hb_007420_020 0.1132127978 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
19 Hb_001143_140 0.1148336861 - - Aldehyde dehydrogenase, putative [Ricinus communis]
20 Hb_008092_020 0.1150039436 - - transcription factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_001174_030 Hb_001174_030 Hb_001544_070 Hb_001544_070 Hb_001174_030--Hb_001544_070 Hb_001706_020 Hb_001706_020 Hb_001174_030--Hb_001706_020 Hb_005034_010 Hb_005034_010 Hb_001174_030--Hb_005034_010 Hb_174101_010 Hb_174101_010 Hb_001174_030--Hb_174101_010 Hb_000472_020 Hb_000472_020 Hb_001174_030--Hb_000472_020 Hb_003562_040 Hb_003562_040 Hb_001174_030--Hb_003562_040 Hb_001544_070--Hb_174101_010 Hb_004122_060 Hb_004122_060 Hb_001544_070--Hb_004122_060 Hb_001544_070--Hb_000472_020 Hb_000092_030 Hb_000092_030 Hb_001544_070--Hb_000092_030 Hb_001544_070--Hb_001706_020 Hb_000215_290 Hb_000215_290 Hb_001706_020--Hb_000215_290 Hb_005488_030 Hb_005488_030 Hb_001706_020--Hb_005488_030 Hb_143629_200 Hb_143629_200 Hb_001706_020--Hb_143629_200 Hb_001706_020--Hb_000472_020 Hb_005034_010--Hb_003562_040 Hb_005054_280 Hb_005054_280 Hb_005034_010--Hb_005054_280 Hb_005034_010--Hb_174101_010 Hb_000614_190 Hb_000614_190 Hb_005034_010--Hb_000614_190 Hb_003835_030 Hb_003835_030 Hb_005034_010--Hb_003835_030 Hb_004166_020 Hb_004166_020 Hb_174101_010--Hb_004166_020 Hb_008092_020 Hb_008092_020 Hb_174101_010--Hb_008092_020 Hb_174101_010--Hb_000472_020 Hb_000613_250 Hb_000613_250 Hb_000472_020--Hb_000613_250 Hb_144703_010 Hb_144703_010 Hb_000472_020--Hb_144703_010 Hb_000342_020 Hb_000342_020 Hb_000472_020--Hb_000342_020 Hb_003562_040--Hb_005054_280 Hb_005074_010 Hb_005074_010 Hb_003562_040--Hb_005074_010 Hb_175670_010 Hb_175670_010 Hb_003562_040--Hb_175670_010 Hb_007007_090 Hb_007007_090 Hb_003562_040--Hb_007007_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.376463 0.210071 0.33262 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.215307 0.330477

CAGE analysis