Hb_001174_050

Information

Type -
Description -
Location Contig1174: 47813-52406
Sequence    

Annotation

kegg
ID tcc:TCM_018243
description DNA/RNA polymerases superfamily protein
nr
ID XP_007032400.1
description DNA/RNA polymerases superfamily protein [Theobroma cacao]
swissprot
ID P0CT40
description Transposon Tf2-9 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-9 PE=3 SV=1
trembl
ID A0A061EEG7
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_018243 PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001174_050 0.0 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
2 Hb_001355_060 0.1218649503 - - PREDICTED: uncharacterized protein LOC105160092 [Sesamum indicum]
3 Hb_159124_010 0.123772155 - - PREDICTED: uncharacterized protein LOC103332224 [Prunus mume]
4 Hb_005432_020 0.1279126834 - - -
5 Hb_101034_010 0.1280607902 - - -
6 Hb_181013_010 0.1280703332 - - PREDICTED: uncharacterized protein LOC105629028 [Jatropha curcas]
7 Hb_000142_090 0.1284340119 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 [Jatropha curcas]
8 Hb_006120_160 0.1285982525 - - -
9 Hb_134377_070 0.1295661162 - - -
10 Hb_000975_060 0.132190452 - - -
11 Hb_000248_020 0.1380638399 - - PREDICTED: uncharacterized protein LOC104243878 [Nicotiana sylvestris]
12 Hb_094694_010 0.1392523009 - - -
13 Hb_179183_010 0.1401484663 - - RALF-LIKE 32 family protein [Populus trichocarpa]
14 Hb_099878_040 0.1403098658 - - PREDICTED: uncharacterized protein LOC102703670 [Oryza brachyantha]
15 Hb_000269_040 0.1459506526 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
16 Hb_047923_030 0.1474306506 - - hypothetical protein JCGZ_09181 [Jatropha curcas]
17 Hb_056506_080 0.1478068161 - - PREDICTED: uncharacterized protein LOC104888944 [Beta vulgaris subsp. vulgaris]
18 Hb_039547_010 0.1478990314 - - PREDICTED: equilibrative nucleotide transporter 3-like [Jatropha curcas]
19 Hb_000916_010 0.1482655977 - - hypothetical protein POPTR_0001s08730g [Populus trichocarpa]
20 Hb_002576_010 0.1540518642 - - -

Gene co-expression network

sample Hb_001174_050 Hb_001174_050 Hb_001355_060 Hb_001355_060 Hb_001174_050--Hb_001355_060 Hb_159124_010 Hb_159124_010 Hb_001174_050--Hb_159124_010 Hb_005432_020 Hb_005432_020 Hb_001174_050--Hb_005432_020 Hb_101034_010 Hb_101034_010 Hb_001174_050--Hb_101034_010 Hb_181013_010 Hb_181013_010 Hb_001174_050--Hb_181013_010 Hb_000142_090 Hb_000142_090 Hb_001174_050--Hb_000142_090 Hb_002973_130 Hb_002973_130 Hb_001355_060--Hb_002973_130 Hb_000061_110 Hb_000061_110 Hb_001355_060--Hb_000061_110 Hb_011358_010 Hb_011358_010 Hb_001355_060--Hb_011358_010 Hb_112791_030 Hb_112791_030 Hb_001355_060--Hb_112791_030 Hb_145080_010 Hb_145080_010 Hb_001355_060--Hb_145080_010 Hb_159124_010--Hb_181013_010 Hb_159124_010--Hb_005432_020 Hb_159124_010--Hb_000142_090 Hb_159124_010--Hb_101034_010 Hb_134377_070 Hb_134377_070 Hb_159124_010--Hb_134377_070 Hb_006120_160 Hb_006120_160 Hb_159124_010--Hb_006120_160 Hb_005432_020--Hb_101034_010 Hb_005432_020--Hb_181013_010 Hb_005432_020--Hb_000142_090 Hb_005432_020--Hb_006120_160 Hb_005432_020--Hb_134377_070 Hb_101034_010--Hb_006120_160 Hb_101034_010--Hb_181013_010 Hb_101034_010--Hb_000142_090 Hb_101034_010--Hb_134377_070 Hb_181013_010--Hb_000142_090 Hb_181013_010--Hb_134377_070 Hb_181013_010--Hb_006120_160 Hb_000142_090--Hb_134377_070 Hb_000142_090--Hb_006120_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0266906 0 0.00431472 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0176488 0.0949939

CAGE analysis