Hb_001178_010

Information

Type -
Description -
Location Contig1178: 31050-33365
Sequence    

Annotation

kegg
ID gmx:100499923
description uncharacterized LOC100499923
nr
ID XP_012066448.1
description PREDICTED: uncharacterized protein LOC105629461 [Jatropha curcas]
swissprot
ID B1H222
description RAB6-interacting golgin OS=Rattus norvegicus GN=Gorab PE=2 SV=2
trembl
ID A0A067L689
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23638 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05353: 31062-33274
cDNA
(Sanger)
(ID:Location)		 006_D24.ab1: 31275-33274

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001178_010 0.0 - - PREDICTED: uncharacterized protein LOC105629461 [Jatropha curcas]
2 Hb_014497_100 0.0650557769 - - PREDICTED: AT-rich interactive domain-containing protein 5 isoform X2 [Jatropha curcas]
3 Hb_000537_100 0.0758245837 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
4 Hb_002316_140 0.0795650884 - - PREDICTED: rac-like GTP-binding protein 3 [Populus euphratica]
5 Hb_004129_090 0.0864187438 - - PREDICTED: uncharacterized protein LOC105646039 [Jatropha curcas]
6 Hb_001900_140 0.0929963871 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Jatropha curcas]
7 Hb_000926_200 0.094471452 transcription factor TF Family: Rcd1-like PREDICTED: cell differentiation protein RCD1 homolog isoform X1 [Jatropha curcas]
8 Hb_000413_240 0.0958684289 - - PREDICTED: transcription factor ILR3-like isoform X2 [Jatropha curcas]
9 Hb_000926_080 0.0960180259 - - PREDICTED: paraspeckle component 1 [Jatropha curcas]
10 Hb_146255_020 0.0995713963 - - PREDICTED: chromatin structure-remodeling complex protein BSH [Jatropha curcas]
11 Hb_000189_570 0.0996222696 - - PREDICTED: uncharacterized protein LOC105647652 [Jatropha curcas]
12 Hb_010098_020 0.1003484495 - - PREDICTED: protein BOLA4, chloroplastic/mitochondrial [Jatropha curcas]
13 Hb_001804_090 0.1007978436 - - PREDICTED: uracil phosphoribosyltransferase isoform X1 [Jatropha curcas]
14 Hb_029622_120 0.102252583 - - PREDICTED: polycomb group protein EMBRYONIC FLOWER 2 [Jatropha curcas]
15 Hb_004965_110 0.1026429035 - - PREDICTED: folylpolyglutamate synthase [Jatropha curcas]
16 Hb_007558_090 0.1029266952 - - PREDICTED: serine/threonine-protein kinase STN8, chloroplastic isoform X1 [Jatropha curcas]
17 Hb_005946_040 0.1040822972 - - PREDICTED: probable protein phosphatase 2C 22 isoform X2 [Jatropha curcas]
18 Hb_073973_090 0.105189963 - - Aminotransferase ybdL, putative [Ricinus communis]
19 Hb_002092_120 0.1056418173 - - PREDICTED: peptidyl-tRNA hydrolase, chloroplastic [Jatropha curcas]
20 Hb_005494_010 0.1078165547 - - catalytic, putative [Ricinus communis]

Gene co-expression network

sample Hb_001178_010 Hb_001178_010 Hb_014497_100 Hb_014497_100 Hb_001178_010--Hb_014497_100 Hb_000537_100 Hb_000537_100 Hb_001178_010--Hb_000537_100 Hb_002316_140 Hb_002316_140 Hb_001178_010--Hb_002316_140 Hb_004129_090 Hb_004129_090 Hb_001178_010--Hb_004129_090 Hb_001900_140 Hb_001900_140 Hb_001178_010--Hb_001900_140 Hb_000926_200 Hb_000926_200 Hb_001178_010--Hb_000926_200 Hb_014497_100--Hb_002316_140 Hb_014497_100--Hb_000537_100 Hb_014497_100--Hb_004129_090 Hb_005946_040 Hb_005946_040 Hb_014497_100--Hb_005946_040 Hb_000163_260 Hb_000163_260 Hb_014497_100--Hb_000163_260 Hb_029622_120 Hb_029622_120 Hb_000537_100--Hb_029622_120 Hb_000537_100--Hb_005946_040 Hb_073973_090 Hb_073973_090 Hb_000537_100--Hb_073973_090 Hb_002631_240 Hb_002631_240 Hb_000537_100--Hb_002631_240 Hb_000537_100--Hb_002316_140 Hb_002572_020 Hb_002572_020 Hb_002316_140--Hb_002572_020 Hb_010098_020 Hb_010098_020 Hb_002316_140--Hb_010098_020 Hb_002316_140--Hb_073973_090 Hb_004129_090--Hb_010098_020 Hb_004129_090--Hb_002316_140 Hb_001623_100 Hb_001623_100 Hb_004129_090--Hb_001623_100 Hb_001541_110 Hb_001541_110 Hb_004129_090--Hb_001541_110 Hb_001587_180 Hb_001587_180 Hb_001900_140--Hb_001587_180 Hb_006132_090 Hb_006132_090 Hb_001900_140--Hb_006132_090 Hb_007558_090 Hb_007558_090 Hb_001900_140--Hb_007558_090 Hb_003266_030 Hb_003266_030 Hb_001900_140--Hb_003266_030 Hb_007904_230 Hb_007904_230 Hb_001900_140--Hb_007904_230 Hb_001900_140--Hb_005946_040 Hb_000035_160 Hb_000035_160 Hb_000926_200--Hb_000035_160 Hb_040819_010 Hb_040819_010 Hb_000926_200--Hb_040819_010 Hb_032202_100 Hb_032202_100 Hb_000926_200--Hb_032202_100 Hb_004984_030 Hb_004984_030 Hb_000926_200--Hb_004984_030 Hb_053709_050 Hb_053709_050 Hb_000926_200--Hb_053709_050 Hb_000926_200--Hb_002316_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
64.806 76.8205 199.551 117.872 36.2625 42.2783
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
90.0506 146.738 52.1333 52.9265 122.408

CAGE analysis