Hb_001178_020

Information

Type transcription factor
Description TF Family: GRF
Location Contig1178: 47735-49860
Sequence    

Annotation

kegg
ID rcu:RCOM_0022930
description hypothetical protein
nr
ID XP_012066450.1
description PREDICTED: growth-regulating factor 3 [Jatropha curcas]
swissprot
ID Q8L8A7
description Growth-regulating factor 4 OS=Arabidopsis thaliana GN=GRF4 PE=2 SV=1
trembl
ID A0A067LE06
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23645 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05354: 48281-49028
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001178_020 0.0 transcription factor TF Family: GRF PREDICTED: growth-regulating factor 3 [Jatropha curcas]
2 Hb_002627_060 0.1364902063 transcription factor TF Family: MYB Duplicated homeodomain-like superfamily protein, putative [Theobroma cacao]
3 Hb_001635_220 0.1451405704 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH87 [Jatropha curcas]
4 Hb_170116_010 0.1482463334 - - Geranyl diphosphate synthase 1 isoform 2 [Theobroma cacao]
5 Hb_000172_610 0.1587288843 - - hypothetical protein POPTR_0017s02240g, partial [Populus trichocarpa]
6 Hb_004254_040 0.161229343 - - PREDICTED: uncharacterized protein LOC105650678 [Jatropha curcas]
7 Hb_005217_020 0.1694125266 - - PREDICTED: ribosomal RNA processing protein 36 homolog isoform X2 [Jatropha curcas]
8 Hb_005590_030 0.1724084692 - - PREDICTED: (S)-coclaurine N-methyltransferase [Jatropha curcas]
9 Hb_000441_230 0.1729119589 - - unnamed protein product [Coffea canephora]
10 Hb_000376_150 0.1744831779 - - O-acyltransferase WSD1 [Gossypium arboreum]
11 Hb_002506_110 0.1762814354 - - PREDICTED: thaumatin-like protein 1b [Jatropha curcas]
12 Hb_009193_130 0.1778013793 - - hypothetical protein RCOM_1620550 [Ricinus communis]
13 Hb_043637_010 0.1811033198 transcription factor TF Family: zf-HD hypothetical protein POPTR_0015s05220g, partial [Populus trichocarpa]
14 Hb_007158_030 0.1812853049 - - UDP-glucosyltransferase, putative [Ricinus communis]
15 Hb_003636_090 0.1818156909 - - PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3-like [Jatropha curcas]
16 Hb_000352_150 0.1825176366 - - hypothetical protein JCGZ_11641 [Jatropha curcas]
17 Hb_126669_010 0.1829797473 transcription factor TF Family: bHLH lMYC4 [Hevea brasiliensis]
18 Hb_000033_060 0.1832865227 - - PREDICTED: uncharacterized protein LOC105111554 isoform X1 [Populus euphratica]
19 Hb_000454_030 0.1839805657 - - -
20 Hb_000928_230 0.1843296398 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001178_020 Hb_001178_020 Hb_002627_060 Hb_002627_060 Hb_001178_020--Hb_002627_060 Hb_001635_220 Hb_001635_220 Hb_001178_020--Hb_001635_220 Hb_170116_010 Hb_170116_010 Hb_001178_020--Hb_170116_010 Hb_000172_610 Hb_000172_610 Hb_001178_020--Hb_000172_610 Hb_004254_040 Hb_004254_040 Hb_001178_020--Hb_004254_040 Hb_005217_020 Hb_005217_020 Hb_001178_020--Hb_005217_020 Hb_002627_060--Hb_000172_610 Hb_126669_010 Hb_126669_010 Hb_002627_060--Hb_126669_010 Hb_000155_080 Hb_000155_080 Hb_002627_060--Hb_000155_080 Hb_009193_130 Hb_009193_130 Hb_002627_060--Hb_009193_130 Hb_098315_100 Hb_098315_100 Hb_002627_060--Hb_098315_100 Hb_000270_400 Hb_000270_400 Hb_002627_060--Hb_000270_400 Hb_003913_100 Hb_003913_100 Hb_001635_220--Hb_003913_100 Hb_000483_370 Hb_000483_370 Hb_001635_220--Hb_000483_370 Hb_000172_530 Hb_000172_530 Hb_001635_220--Hb_000172_530 Hb_001635_220--Hb_004254_040 Hb_000603_200 Hb_000603_200 Hb_001635_220--Hb_000603_200 Hb_000038_130 Hb_000038_130 Hb_001635_220--Hb_000038_130 Hb_043637_010 Hb_043637_010 Hb_170116_010--Hb_043637_010 Hb_000352_150 Hb_000352_150 Hb_170116_010--Hb_000352_150 Hb_000523_020 Hb_000523_020 Hb_170116_010--Hb_000523_020 Hb_001454_390 Hb_001454_390 Hb_170116_010--Hb_001454_390 Hb_002875_090 Hb_002875_090 Hb_170116_010--Hb_002875_090 Hb_170116_010--Hb_001635_220 Hb_000172_610--Hb_000155_080 Hb_000172_610--Hb_004254_040 Hb_000172_610--Hb_098315_100 Hb_000172_610--Hb_126669_010 Hb_000172_610--Hb_000270_400 Hb_004254_040--Hb_000270_400 Hb_001140_080 Hb_001140_080 Hb_004254_040--Hb_001140_080 Hb_012807_120 Hb_012807_120 Hb_004254_040--Hb_012807_120 Hb_000009_640 Hb_000009_640 Hb_004254_040--Hb_000009_640 Hb_000264_060 Hb_000264_060 Hb_005217_020--Hb_000264_060 Hb_002837_070 Hb_002837_070 Hb_005217_020--Hb_002837_070 Hb_000270_450 Hb_000270_450 Hb_005217_020--Hb_000270_450 Hb_001523_010 Hb_001523_010 Hb_005217_020--Hb_001523_010 Hb_005217_020--Hb_000172_530 Hb_009615_110 Hb_009615_110 Hb_005217_020--Hb_009615_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.93716 0.172476 0.171343 0.0535858 5.33427 6.47382
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.67915 1.71045 0.284621 0.036682 0.253356

CAGE analysis