Hb_001178_030

Information

Type -
Description -
Location Contig1178: 50207-65343
Sequence    

Annotation

kegg
ID rcu:RCOM_0022940
description starch branching enzyme II, putative (EC:2.4.1.18)
nr
ID XP_012066451.1
description PREDICTED: 1,4-alpha-glucan-branching enzyme 2-2, chloroplastic/amyloplastic [Jatropha curcas]
swissprot
ID Q41058
description 1,4-alpha-glucan-branching enzyme 1, chloroplastic/amyloplastic OS=Pisum sativum GN=SBEI PE=1 SV=1
trembl
ID A0A067L2P8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23646 PE=4 SV=1
Gene Ontology
ID GO:0003844
description starch branching enzyme isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05356: 50218-65201 , PASA_asmbl_05358: 52649-52768 , PASA_asmbl_05359: 53119-53404
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001178_030 0.0 - - PREDICTED: 1,4-alpha-glucan-branching enzyme 2-2, chloroplastic/amyloplastic [Jatropha curcas]
2 Hb_111552_010 0.0672708249 - - PREDICTED: ATP sulfurylase 2 [Jatropha curcas]
3 Hb_000586_020 0.0786158578 desease resistance Gene Name: NB-ARC hypothetical protein F383_02497 [Gossypium arboreum]
4 Hb_005305_130 0.0831544589 - - PREDICTED: sulfite reductase [ferredoxin], chloroplastic [Jatropha curcas]
5 Hb_000806_030 0.083257648 transcription factor TF Family: C2H2 PREDICTED: probable lysine-specific demethylase ELF6 [Jatropha curcas]
6 Hb_002249_030 0.0837386178 - - PREDICTED: chaperone protein ClpC, chloroplastic [Jatropha curcas]
7 Hb_000404_030 0.0859036109 - - PREDICTED: protein NAP1 [Jatropha curcas]
8 Hb_000008_280 0.0898579684 - - PREDICTED: double-stranded RNA-binding protein 2 [Jatropha curcas]
9 Hb_002600_070 0.0904257794 transcription factor TF Family: TAZ PREDICTED: histone acetyltransferase HAC12 [Jatropha curcas]
10 Hb_004994_350 0.0913713648 - - PREDICTED: UPF0187 protein At3g61320, chloroplastic [Jatropha curcas]
11 Hb_009158_060 0.0921290319 - - PREDICTED: CDPK-related kinase 3 [Jatropha curcas]
12 Hb_000358_220 0.0927711413 - - PREDICTED: SNW/SKI-interacting protein-like [Jatropha curcas]
13 Hb_004774_090 0.0938219721 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein At4g27190-like [Jatropha curcas]
14 Hb_006846_170 0.0966498437 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX10L [Jatropha curcas]
15 Hb_003661_010 0.0990585568 - - PREDICTED: zinc transporter 6, chloroplastic [Jatropha curcas]
16 Hb_000684_350 0.1002829175 - - PREDICTED: uncharacterized protein LOC105642163 isoform X1 [Jatropha curcas]
17 Hb_000748_090 0.100415243 - - glucose inhibited division protein A, putative [Ricinus communis]
18 Hb_000179_190 0.1004694359 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 4 isoform X1 [Vitis vinifera]
19 Hb_068804_090 0.1004736106 - - PREDICTED: probable cytosolic oligopeptidase A [Jatropha curcas]
20 Hb_004659_090 0.1021227619 - - PREDICTED: uncharacterized protein LOC105629935 [Jatropha curcas]

Gene co-expression network

sample Hb_001178_030 Hb_001178_030 Hb_111552_010 Hb_111552_010 Hb_001178_030--Hb_111552_010 Hb_000586_020 Hb_000586_020 Hb_001178_030--Hb_000586_020 Hb_005305_130 Hb_005305_130 Hb_001178_030--Hb_005305_130 Hb_000806_030 Hb_000806_030 Hb_001178_030--Hb_000806_030 Hb_002249_030 Hb_002249_030 Hb_001178_030--Hb_002249_030 Hb_000404_030 Hb_000404_030 Hb_001178_030--Hb_000404_030 Hb_004774_090 Hb_004774_090 Hb_111552_010--Hb_004774_090 Hb_000452_030 Hb_000452_030 Hb_111552_010--Hb_000452_030 Hb_111552_010--Hb_000586_020 Hb_006846_170 Hb_006846_170 Hb_111552_010--Hb_006846_170 Hb_000956_040 Hb_000956_040 Hb_111552_010--Hb_000956_040 Hb_000586_020--Hb_000404_030 Hb_000586_020--Hb_004774_090 Hb_000586_020--Hb_002249_030 Hb_068804_090 Hb_068804_090 Hb_000586_020--Hb_068804_090 Hb_009158_060 Hb_009158_060 Hb_005305_130--Hb_009158_060 Hb_003661_010 Hb_003661_010 Hb_005305_130--Hb_003661_010 Hb_160608_010 Hb_160608_010 Hb_005305_130--Hb_160608_010 Hb_001414_010 Hb_001414_010 Hb_005305_130--Hb_001414_010 Hb_029552_020 Hb_029552_020 Hb_005305_130--Hb_029552_020 Hb_001159_060 Hb_001159_060 Hb_005305_130--Hb_001159_060 Hb_004659_090 Hb_004659_090 Hb_000806_030--Hb_004659_090 Hb_002056_100 Hb_002056_100 Hb_000806_030--Hb_002056_100 Hb_000645_130 Hb_000645_130 Hb_000806_030--Hb_000645_130 Hb_001279_040 Hb_001279_040 Hb_000806_030--Hb_001279_040 Hb_000179_190 Hb_000179_190 Hb_000806_030--Hb_000179_190 Hb_003929_210 Hb_003929_210 Hb_000806_030--Hb_003929_210 Hb_002249_030--Hb_000404_030 Hb_011616_040 Hb_011616_040 Hb_002249_030--Hb_011616_040 Hb_000008_280 Hb_000008_280 Hb_002249_030--Hb_000008_280 Hb_002600_070 Hb_002600_070 Hb_002249_030--Hb_002600_070 Hb_000771_170 Hb_000771_170 Hb_002249_030--Hb_000771_170 Hb_002078_470 Hb_002078_470 Hb_000404_030--Hb_002078_470 Hb_000404_030--Hb_009158_060 Hb_013358_060 Hb_013358_060 Hb_000404_030--Hb_013358_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.6606 44.5071 42.6199 29.4157 17.2358 16.364
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.3837 7.5294 22.0309 20.1322 54.5235

CAGE analysis