Hb_001178_060

Information

Type -
Description -
Location Contig1178: 102467-103725
Sequence    

Annotation

kegg
ID pxb:103963644
description protein BUD31 homolog 1
nr
ID XP_012066454.1
description PREDICTED: protein BUD31 homolog 2 isoform X1 [Jatropha curcas]
swissprot
ID Q94DE2
description Protein BUD31 homolog 1 OS=Oryza sativa subsp. japonica GN=Os01g0857700 PE=2 SV=1
trembl
ID B9T6Y0
description Protein G10, putative OS=Ricinus communis GN=RCOM_0014080 PE=4 SV=1
Gene Ontology
ID GO:0005634
description protein bud31 homolog 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05362: 102510-104890 , PASA_asmbl_05363: 102638-104890 , PASA_asmbl_05364: 104161-104360
cDNA
(Sanger)
(ID:Location)		 011_G04.ab1: 102570-104890 , 015_N19.ab1: 102892-104864 , 023_O24.ab1: 102694-104890 , 024_L15.ab1: 102695-104890 , 025_J24.ab1: 102594-104890 , 026_B13.ab1: 102717-104856 , 028_I23.ab1: 102628-104890 , 032_B18.ab1: 102570-104890 , 037_M07.ab1: 102638-104890 , 040_O17.ab1: 102550-104890 , 043_P11.ab1: 102595-104890 , 046_A24.ab1: 102573-104856 , 051_I07.ab1: 102609-104890

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001178_060 0.0 - - PREDICTED: protein BUD31 homolog 2 isoform X1 [Jatropha curcas]
2 Hb_005016_030 0.0428083511 - - hypothetical protein JCGZ_16549 [Jatropha curcas]
3 Hb_000322_170 0.0528022297 - - PREDICTED: nucleosome assembly protein 1;3 [Jatropha curcas]
4 Hb_000640_210 0.0840725709 - - hypothetical protein JCGZ_14045 [Jatropha curcas]
5 Hb_060437_010 0.0871819732 - - E3 ubiquitin protein ligase RIE1 [Morus notabilis]
6 Hb_000076_290 0.0873991778 - - translation factor sui1, putative [Ricinus communis]
7 Hb_002149_040 0.0942827852 - - conserved hypothetical protein [Ricinus communis]
8 Hb_183510_010 0.0978702149 - - PREDICTED: RPM1-interacting protein 4-like isoform X2 [Jatropha curcas]
9 Hb_000174_200 0.0986921943 - - PREDICTED: pre-mRNA-splicing factor 38 [Jatropha curcas]
10 Hb_004032_350 0.1001506499 - - PREDICTED: splicing factor U2af small subunit B-like isoform X1 [Musa acuminata subsp. malaccensis]
11 Hb_000270_450 0.100512017 - - PREDICTED: uncharacterized protein LOC105167687 [Sesamum indicum]
12 Hb_007809_060 0.1040243667 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH3 [Jatropha curcas]
13 Hb_001034_020 0.1052175304 - - PREDICTED: uncharacterized protein LOC105641929 [Jatropha curcas]
14 Hb_003050_090 0.1064451984 - - lupus la ribonucleoprotein, putative [Ricinus communis]
15 Hb_006173_020 0.1074405821 - - PREDICTED: uncharacterized protein At2g39795, mitochondrial-like [Jatropha curcas]
16 Hb_012760_200 0.1078465551 - - protein phsophatase-2a, putative [Ricinus communis]
17 Hb_001016_060 0.1093963609 - - conserved hypothetical protein [Ricinus communis]
18 Hb_025048_040 0.1104716001 - - PREDICTED: NAP1-related protein 2 [Jatropha curcas]
19 Hb_000088_180 0.1114398327 - - hypothetical protein JCGZ_11198 [Jatropha curcas]
20 Hb_000320_440 0.1117877409 - - PREDICTED: tRNA wybutosine-synthesizing protein 2/3/4 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001178_060 Hb_001178_060 Hb_005016_030 Hb_005016_030 Hb_001178_060--Hb_005016_030 Hb_000322_170 Hb_000322_170 Hb_001178_060--Hb_000322_170 Hb_000640_210 Hb_000640_210 Hb_001178_060--Hb_000640_210 Hb_060437_010 Hb_060437_010 Hb_001178_060--Hb_060437_010 Hb_000076_290 Hb_000076_290 Hb_001178_060--Hb_000076_290 Hb_002149_040 Hb_002149_040 Hb_001178_060--Hb_002149_040 Hb_005016_030--Hb_000322_170 Hb_005016_030--Hb_002149_040 Hb_006173_020 Hb_006173_020 Hb_005016_030--Hb_006173_020 Hb_000320_440 Hb_000320_440 Hb_005016_030--Hb_000320_440 Hb_001016_060 Hb_001016_060 Hb_005016_030--Hb_001016_060 Hb_000322_170--Hb_000640_210 Hb_004032_350 Hb_004032_350 Hb_000322_170--Hb_004032_350 Hb_000322_170--Hb_000076_290 Hb_000174_200 Hb_000174_200 Hb_000322_170--Hb_000174_200 Hb_000640_210--Hb_000076_290 Hb_000640_210--Hb_000174_200 Hb_005028_010 Hb_005028_010 Hb_000640_210--Hb_005028_010 Hb_012760_200 Hb_012760_200 Hb_000640_210--Hb_012760_200 Hb_001034_020 Hb_001034_020 Hb_060437_010--Hb_001034_020 Hb_003050_090 Hb_003050_090 Hb_060437_010--Hb_003050_090 Hb_060437_010--Hb_012760_200 Hb_000025_750 Hb_000025_750 Hb_060437_010--Hb_000025_750 Hb_060437_010--Hb_000640_210 Hb_000076_290--Hb_000174_200 Hb_000076_290--Hb_004032_350 Hb_001439_180 Hb_001439_180 Hb_000076_290--Hb_001439_180 Hb_015401_020 Hb_015401_020 Hb_000076_290--Hb_015401_020 Hb_002270_010 Hb_002270_010 Hb_000076_290--Hb_002270_010 Hb_002405_020 Hb_002405_020 Hb_002149_040--Hb_002405_020 Hb_001776_080 Hb_001776_080 Hb_002149_040--Hb_001776_080 Hb_002149_040--Hb_001016_060 Hb_000926_270 Hb_000926_270 Hb_002149_040--Hb_000926_270 Hb_002149_040--Hb_006173_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3288.85 1216.59 108.177 221.413 2766.54 2736.05
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1094.91 830.253 692.336 264.317 59.6814

CAGE analysis