Hb_001178_090

Information

Type -
Description -
Location Contig1178: 143425-148574
Sequence    

Annotation

kegg
ID pop:POPTR_0006s11570g
description Monodehydroascorbate reductase family protein
nr
ID XP_006381300.1
description Monodehydroascorbate reductase family protein [Populus trichocarpa]
swissprot
ID Q43497
description Monodehydroascorbate reductase OS=Solanum lycopersicum GN=AFRR PE=1 SV=1
trembl
ID A9P7V5
description Monodehydroascorbate reductase family protein OS=Populus trichocarpa GN=POPTR_0006s11570g PE=2 SV=1
Gene Ontology
ID GO:0005623
description monodehydroascorbate reductase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05375: 143492-148494
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001178_090 0.0 - - Monodehydroascorbate reductase family protein [Populus trichocarpa]
2 Hb_179960_010 0.109084412 - - PREDICTED: E3 ubiquitin-protein ligase ATL4-like [Jatropha curcas]
3 Hb_000032_430 0.1167486875 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000203_070 0.1309762507 - - PREDICTED: uncharacterized protein LOC105649674 [Jatropha curcas]
5 Hb_012395_050 0.1365662254 - - PREDICTED: uncharacterized protein LOC105632180 [Jatropha curcas]
6 Hb_003050_100 0.1390250249 - - PREDICTED: uncharacterized protein LOC105633987 [Jatropha curcas]
7 Hb_002592_050 0.139673873 - - PREDICTED: LON peptidase N-terminal domain and RING finger protein 1-like [Jatropha curcas]
8 Hb_034507_060 0.1414061888 - - PREDICTED: UPF0503 protein At3g09070, chloroplastic-like [Citrus sinensis]
9 Hb_002999_080 0.1416384204 transcription factor TF Family: G2-like PREDICTED: accessory gland protein Acp36DE [Jatropha curcas]
10 Hb_002749_040 0.1425376137 - - Ribosomal protein L6 family protein [Theobroma cacao]
11 Hb_155444_010 0.1460058531 - - -
12 Hb_006483_060 0.1528568175 - - PREDICTED: protein RALF-like 34 [Jatropha curcas]
13 Hb_003647_040 0.1546805973 - - conserved hypothetical protein [Ricinus communis]
14 Hb_134014_010 0.1548377558 - - PREDICTED: testis-expressed sequence 10 protein isoform X2 [Jatropha curcas]
15 Hb_005694_180 0.1548553925 - - PREDICTED: cytochrome b5 [Jatropha curcas]
16 Hb_080477_080 0.1548714616 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4 isoform X1 [Gossypium raimondii]
17 Hb_003540_120 0.1557502924 - - calmodulin binding protein, putative [Ricinus communis]
18 Hb_003710_020 0.1572652125 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53440 isoform X1 [Jatropha curcas]
19 Hb_158092_040 0.1579739562 - - PREDICTED: uncharacterized protein LOC105647294 [Jatropha curcas]
20 Hb_002539_050 0.1583482166 - - PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3 [Jatropha curcas]

Gene co-expression network

sample Hb_001178_090 Hb_001178_090 Hb_179960_010 Hb_179960_010 Hb_001178_090--Hb_179960_010 Hb_000032_430 Hb_000032_430 Hb_001178_090--Hb_000032_430 Hb_000203_070 Hb_000203_070 Hb_001178_090--Hb_000203_070 Hb_012395_050 Hb_012395_050 Hb_001178_090--Hb_012395_050 Hb_003050_100 Hb_003050_100 Hb_001178_090--Hb_003050_100 Hb_002592_050 Hb_002592_050 Hb_001178_090--Hb_002592_050 Hb_179960_010--Hb_012395_050 Hb_005784_060 Hb_005784_060 Hb_179960_010--Hb_005784_060 Hb_002203_020 Hb_002203_020 Hb_179960_010--Hb_002203_020 Hb_158092_040 Hb_158092_040 Hb_179960_010--Hb_158092_040 Hb_155444_010 Hb_155444_010 Hb_179960_010--Hb_155444_010 Hb_160405_010 Hb_160405_010 Hb_000032_430--Hb_160405_010 Hb_003647_040 Hb_003647_040 Hb_000032_430--Hb_003647_040 Hb_002749_040 Hb_002749_040 Hb_000032_430--Hb_002749_040 Hb_002539_050 Hb_002539_050 Hb_000032_430--Hb_002539_050 Hb_000032_430--Hb_003050_100 Hb_000776_040 Hb_000776_040 Hb_000203_070--Hb_000776_040 Hb_034507_060 Hb_034507_060 Hb_000203_070--Hb_034507_060 Hb_005333_080 Hb_005333_080 Hb_000203_070--Hb_005333_080 Hb_000085_380 Hb_000085_380 Hb_000203_070--Hb_000085_380 Hb_012760_090 Hb_012760_090 Hb_000203_070--Hb_012760_090 Hb_012395_050--Hb_155444_010 Hb_134014_010 Hb_134014_010 Hb_012395_050--Hb_134014_010 Hb_029142_040 Hb_029142_040 Hb_012395_050--Hb_029142_040 Hb_000997_240 Hb_000997_240 Hb_012395_050--Hb_000997_240 Hb_000959_130 Hb_000959_130 Hb_012395_050--Hb_000959_130 Hb_003050_100--Hb_002592_050 Hb_032208_050 Hb_032208_050 Hb_003050_100--Hb_032208_050 Hb_005839_030 Hb_005839_030 Hb_003050_100--Hb_005839_030 Hb_001564_090 Hb_001564_090 Hb_003050_100--Hb_001564_090 Hb_002592_050--Hb_005839_030 Hb_002592_050--Hb_032208_050 Hb_002592_050--Hb_155444_010 Hb_002025_050 Hb_002025_050 Hb_002592_050--Hb_002025_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.38588 14.3484 19.3679 57.8573 0.456083 4.92319
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.22259 1.46378 1.53986 24.0964 11.9201

CAGE analysis