Hb_001178_100

Information

Type -
Description -
Location Contig1178: 149726-150910
Sequence    

Annotation

kegg
ID tcc:TCM_022507
description 60S acidic ribosomal protein P2-4
nr
ID XP_007027672.1
description 60S acidic ribosomal protein P2-4 [Theobroma cacao]
swissprot
ID O24415
description 60S acidic ribosomal protein P2B OS=Zea mays GN=RPP2B PE=1 SV=1
trembl
ID A0A061F117
description 60S acidic ribosomal protein P2-4 OS=Theobroma cacao GN=TCM_022507 PE=3 SV=1
Gene Ontology
ID GO:0005840
description 60s acidic ribosomal protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05376: 149728-151075 , PASA_asmbl_05377: 149726-151042
cDNA
(Sanger)
(ID:Location)		 029_J22.ab1: 149728-150860

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001178_100 0.0 - - 60S acidic ribosomal protein P2-4 [Theobroma cacao]
2 Hb_002007_300 0.1012033461 - - hypothetical protein JCGZ_23450 [Jatropha curcas]
3 Hb_003939_080 0.1077614217 - - conserved hypothetical protein [Ricinus communis]
4 Hb_028841_030 0.1083713727 - - -
5 Hb_000101_270 0.1088566443 - - pleckstrin homology domain-containing family protein [Populus trichocarpa]
6 Hb_000487_250 0.1113385228 - - 60S ribosomal protein L27e, putative [Ricinus communis]
7 Hb_002868_010 0.11177057 - - 60S ribosomal protein L30, putative [Ricinus communis]
8 Hb_046049_010 0.1138176228 - - PREDICTED: far upstream element-binding protein 2 isoform X3 [Jatropha curcas]
9 Hb_000933_180 0.1143410523 - - PREDICTED: chorismate mutase 3, chloroplastic [Jatropha curcas]
10 Hb_002518_050 0.1150155746 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM10 [Jatropha curcas]
11 Hb_000395_290 0.1160272523 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-8 [Jatropha curcas]
12 Hb_001377_150 0.1189387472 - - hypothetical protein JCGZ_14266 [Jatropha curcas]
13 Hb_001946_210 0.1193086488 - - ribosomal protein l7ae, putative [Ricinus communis]
14 Hb_007558_010 0.1196510279 - - PREDICTED: mitochondrial import receptor subunit TOM9-2 [Jatropha curcas]
15 Hb_007617_020 0.1200606169 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003363_110 0.1200788309 - - protein with unknown function [Ricinus communis]
17 Hb_000012_220 0.1221316713 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000000_160 0.1241927949 - - PREDICTED: membrin-11 [Jatropha curcas]
19 Hb_011805_080 0.1243391305 - - PREDICTED: uncharacterized protein LOC100242357 [Vitis vinifera]
20 Hb_017469_020 0.125988742 - - -

Gene co-expression network

sample Hb_001178_100 Hb_001178_100 Hb_002007_300 Hb_002007_300 Hb_001178_100--Hb_002007_300 Hb_003939_080 Hb_003939_080 Hb_001178_100--Hb_003939_080 Hb_028841_030 Hb_028841_030 Hb_001178_100--Hb_028841_030 Hb_000101_270 Hb_000101_270 Hb_001178_100--Hb_000101_270 Hb_000487_250 Hb_000487_250 Hb_001178_100--Hb_000487_250 Hb_002868_010 Hb_002868_010 Hb_001178_100--Hb_002868_010 Hb_046049_010 Hb_046049_010 Hb_002007_300--Hb_046049_010 Hb_003363_110 Hb_003363_110 Hb_002007_300--Hb_003363_110 Hb_011970_030 Hb_011970_030 Hb_002007_300--Hb_011970_030 Hb_002918_210 Hb_002918_210 Hb_002007_300--Hb_002918_210 Hb_003292_040 Hb_003292_040 Hb_002007_300--Hb_003292_040 Hb_003939_080--Hb_002868_010 Hb_001512_070 Hb_001512_070 Hb_003939_080--Hb_001512_070 Hb_001946_210 Hb_001946_210 Hb_003939_080--Hb_001946_210 Hb_011360_140 Hb_011360_140 Hb_003939_080--Hb_011360_140 Hb_002007_060 Hb_002007_060 Hb_003939_080--Hb_002007_060 Hb_001828_090 Hb_001828_090 Hb_003939_080--Hb_001828_090 Hb_028841_030--Hb_003363_110 Hb_005186_050 Hb_005186_050 Hb_028841_030--Hb_005186_050 Hb_011381_060 Hb_011381_060 Hb_028841_030--Hb_011381_060 Hb_003607_150 Hb_003607_150 Hb_028841_030--Hb_003607_150 Hb_007154_020 Hb_007154_020 Hb_028841_030--Hb_007154_020 Hb_003069_010 Hb_003069_010 Hb_028841_030--Hb_003069_010 Hb_000101_270--Hb_003939_080 Hb_000101_270--Hb_001946_210 Hb_000101_270--Hb_002868_010 Hb_064264_010 Hb_064264_010 Hb_000101_270--Hb_064264_010 Hb_070986_010 Hb_070986_010 Hb_000101_270--Hb_070986_010 Hb_000000_160 Hb_000000_160 Hb_000101_270--Hb_000000_160 Hb_005618_140 Hb_005618_140 Hb_000487_250--Hb_005618_140 Hb_001818_020 Hb_001818_020 Hb_000487_250--Hb_001818_020 Hb_000012_220 Hb_000012_220 Hb_000487_250--Hb_000012_220 Hb_000970_010 Hb_000970_010 Hb_000487_250--Hb_000970_010 Hb_000025_530 Hb_000025_530 Hb_000487_250--Hb_000025_530 Hb_007617_020 Hb_007617_020 Hb_000487_250--Hb_007617_020 Hb_002868_010--Hb_001946_210 Hb_002868_010--Hb_002007_060 Hb_002868_010--Hb_000000_160 Hb_002868_010--Hb_011360_140 Hb_002868_010--Hb_001512_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
103.999 27.7533 32.3651 31.6733 47.7758 57.2089
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
54.4035 138.611 31.2542 25.4163 7.20444

CAGE analysis