Hb_001178_120

Information

Type -
Description -
Location Contig1178: 155775-160956
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa020120mg
description hypothetical protein
nr
ID AFP55574.1
description non-ltr retroelement reverse transcriptase [Rosa rugosa]
swissprot
ID -
description -
trembl
ID J7G2Z7
description Non-ltr retroelement reverse transcriptase OS=Rosa rugosa PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001178_120 0.0 - - non-ltr retroelement reverse transcriptase [Rosa rugosa]
2 Hb_158990_010 0.0894556812 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
3 Hb_000153_020 0.123416622 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000094_390 0.1286328364 - - PREDICTED: acyl-[acyl-carrier-protein] desaturase, chloroplastic-like [Nelumbo nucifera]
5 Hb_005539_320 0.1357588194 - - PREDICTED: pumilio homolog 15-like [Vitis vinifera]
6 Hb_177627_010 0.1660390249 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
7 Hb_132629_010 0.1767898376 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
8 Hb_001604_110 0.1828835876 - - -
9 Hb_000153_040 0.1863034109 - - -
10 Hb_000007_310 0.2036459091 - - hypothetical protein POPTR_0010s14370g [Populus trichocarpa]
11 Hb_000395_100 0.212616406 - - Protein MYG1, putative [Ricinus communis]
12 Hb_003494_260 0.2147009682 - - -
13 Hb_075570_010 0.2191191496 - - -
14 Hb_001892_160 0.2223442163 - - PREDICTED: MLP-like protein 28-like [Citrus sinensis]
15 Hb_000345_480 0.2429387313 - - cyclin-dependent protein kinase, putative [Ricinus communis]
16 Hb_000028_630 0.2489974932 - - PIN-like protein, partial [Selaginella apoda]
17 Hb_011639_070 0.2492944979 - - PREDICTED: uncharacterized protein LOC105636024 isoform X2 [Jatropha curcas]
18 Hb_122567_010 0.2577974527 - - -
19 Hb_007634_020 0.260341052 - - -
20 Hb_002498_200 0.2618617362 transcription factor TF Family: G2-like PREDICTED: putative Myb family transcription factor At1g14600 [Jatropha curcas]

Gene co-expression network

sample Hb_001178_120 Hb_001178_120 Hb_158990_010 Hb_158990_010 Hb_001178_120--Hb_158990_010 Hb_000153_020 Hb_000153_020 Hb_001178_120--Hb_000153_020 Hb_000094_390 Hb_000094_390 Hb_001178_120--Hb_000094_390 Hb_005539_320 Hb_005539_320 Hb_001178_120--Hb_005539_320 Hb_177627_010 Hb_177627_010 Hb_001178_120--Hb_177627_010 Hb_132629_010 Hb_132629_010 Hb_001178_120--Hb_132629_010 Hb_158990_010--Hb_000094_390 Hb_158990_010--Hb_000153_020 Hb_000153_040 Hb_000153_040 Hb_158990_010--Hb_000153_040 Hb_000395_100 Hb_000395_100 Hb_158990_010--Hb_000395_100 Hb_009693_040 Hb_009693_040 Hb_158990_010--Hb_009693_040 Hb_000153_020--Hb_177627_010 Hb_000153_020--Hb_132629_010 Hb_000007_310 Hb_000007_310 Hb_000153_020--Hb_000007_310 Hb_000153_020--Hb_005539_320 Hb_075570_010 Hb_075570_010 Hb_000153_020--Hb_075570_010 Hb_000094_390--Hb_000153_020 Hb_001892_160 Hb_001892_160 Hb_000094_390--Hb_001892_160 Hb_000094_390--Hb_005539_320 Hb_000094_390--Hb_177627_010 Hb_001604_110 Hb_001604_110 Hb_005539_320--Hb_001604_110 Hb_005539_320--Hb_177627_010 Hb_005539_320--Hb_132629_010 Hb_005539_320--Hb_000007_310 Hb_177627_010--Hb_132629_010 Hb_177627_010--Hb_001604_110 Hb_177627_010--Hb_000007_310 Hb_177627_010--Hb_075570_010 Hb_132629_010--Hb_075570_010 Hb_132629_010--Hb_000007_310 Hb_003494_260 Hb_003494_260 Hb_132629_010--Hb_003494_260 Hb_132629_010--Hb_000153_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0564953 0 0 0 0.0231881 0.0146681
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis