Hb_001178_150

Information

Type -
Description -
Location Contig1178: 183497-210915
Sequence    

Annotation

kegg
ID rcu:RCOM_0331180
description DNA binding protein, putative
nr
ID XP_012073946.1
description PREDICTED: uncharacterized protein LOC105635484 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KK97
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08329 PE=4 SV=1
Gene Ontology
ID GO:0043229
description dna binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05380: 185602-207454 , PASA_asmbl_05381: 186618-186912 , PASA_asmbl_05382: 208934-209561 , PASA_asmbl_05383: 210652-210828
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001178_150 0.0 - - PREDICTED: uncharacterized protein LOC105635484 [Jatropha curcas]
2 Hb_000935_090 0.0529237852 - - PREDICTED: putative nuclear matrix constituent protein 1-like protein [Jatropha curcas]
3 Hb_000347_570 0.0551107487 - - PREDICTED: transcription initiation factor TFIID subunit 12b isoform X1 [Jatropha curcas]
4 Hb_000796_190 0.0641782371 - - hypothetical protein F383_31148 [Gossypium arboreum]
5 Hb_001473_090 0.0654859264 - - PREDICTED: uncharacterized protein LOC105650374 [Jatropha curcas]
6 Hb_009151_020 0.0663212232 - - PREDICTED: DNA polymerase delta catalytic subunit [Jatropha curcas]
7 Hb_000120_620 0.0685137258 - - PREDICTED: serine/threonine-protein kinase/endoribonuclease IRE1a isoform X1 [Jatropha curcas]
8 Hb_001417_050 0.07157892 - - PREDICTED: G patch domain-containing protein TGH [Jatropha curcas]
9 Hb_000329_130 0.0722530576 - - beta-tubulin cofactor d, putative [Ricinus communis]
10 Hb_003029_130 0.0729205432 - - carboxypeptidase regulatory region-containingprotein, putative [Ricinus communis]
11 Hb_028872_120 0.0734682772 - - PREDICTED: cyclin-dependent kinase G-2 [Jatropha curcas]
12 Hb_000025_650 0.0750252152 - - exosome complex exonuclease rrp45, putative [Ricinus communis]
13 Hb_002392_030 0.0761074327 - - WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related [Theobroma cacao]
14 Hb_004429_160 0.077924821 - - PREDICTED: serine/threonine-protein kinase TAO3 isoform X1 [Jatropha curcas]
15 Hb_001369_350 0.0785124988 - - Cisplatin resistance-associated overexpressed protein, putative [Ricinus communis]
16 Hb_003124_130 0.0794401456 - - PREDICTED: KH domain-containing protein At4g18375 isoform X1 [Jatropha curcas]
17 Hb_002301_270 0.0796172531 - - PREDICTED: glyoxysomal processing protease, glyoxysomal isoform X1 [Jatropha curcas]
18 Hb_001493_040 0.0818461303 - - PREDICTED: FACT complex subunit SPT16-like [Jatropha curcas]
19 Hb_005892_030 0.0818644068 - - PREDICTED: splicing factor U2af large subunit A [Jatropha curcas]
20 Hb_017895_020 0.0847100982 - - Vacuolar protein sorting protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001178_150 Hb_001178_150 Hb_000935_090 Hb_000935_090 Hb_001178_150--Hb_000935_090 Hb_000347_570 Hb_000347_570 Hb_001178_150--Hb_000347_570 Hb_000796_190 Hb_000796_190 Hb_001178_150--Hb_000796_190 Hb_001473_090 Hb_001473_090 Hb_001178_150--Hb_001473_090 Hb_009151_020 Hb_009151_020 Hb_001178_150--Hb_009151_020 Hb_000120_620 Hb_000120_620 Hb_001178_150--Hb_000120_620 Hb_001493_040 Hb_001493_040 Hb_000935_090--Hb_001493_040 Hb_001417_050 Hb_001417_050 Hb_000935_090--Hb_001417_050 Hb_000935_090--Hb_000796_190 Hb_000025_650 Hb_000025_650 Hb_000935_090--Hb_000025_650 Hb_004429_160 Hb_004429_160 Hb_000935_090--Hb_004429_160 Hb_000347_570--Hb_009151_020 Hb_000347_570--Hb_001473_090 Hb_020665_030 Hb_020665_030 Hb_000347_570--Hb_020665_030 Hb_000347_570--Hb_000025_650 Hb_000347_570--Hb_001417_050 Hb_007558_120 Hb_007558_120 Hb_000796_190--Hb_007558_120 Hb_003124_130 Hb_003124_130 Hb_000796_190--Hb_003124_130 Hb_000329_130 Hb_000329_130 Hb_000796_190--Hb_000329_130 Hb_002174_020 Hb_002174_020 Hb_000796_190--Hb_002174_020 Hb_000300_360 Hb_000300_360 Hb_000796_190--Hb_000300_360 Hb_001454_320 Hb_001454_320 Hb_000796_190--Hb_001454_320 Hb_000209_070 Hb_000209_070 Hb_001473_090--Hb_000209_070 Hb_002749_110 Hb_002749_110 Hb_001473_090--Hb_002749_110 Hb_001473_090--Hb_009151_020 Hb_000785_040 Hb_000785_040 Hb_001473_090--Hb_000785_040 Hb_009151_020--Hb_020665_030 Hb_009151_020--Hb_000329_130 Hb_000914_080 Hb_000914_080 Hb_009151_020--Hb_000914_080 Hb_004899_070 Hb_004899_070 Hb_000120_620--Hb_004899_070 Hb_004970_160 Hb_004970_160 Hb_000120_620--Hb_004970_160 Hb_000098_130 Hb_000098_130 Hb_000120_620--Hb_000098_130 Hb_003097_180 Hb_003097_180 Hb_000120_620--Hb_003097_180 Hb_000261_290 Hb_000261_290 Hb_000120_620--Hb_000261_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.16425 5.2111 3.46996 2.60585 6.71477 8.28478
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.43263 1.67373 1.48275 2.99423 3.08449

CAGE analysis