Hb_001183_010

Information

Type -
Description -
Location Contig1183: 22987-24692
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001183_010 0.0 - - -
2 Hb_010727_010 0.1279627033 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
3 Hb_081745_010 0.1498353679 - - hypothetical protein CISIN_1g030953mg [Citrus sinensis]
4 Hb_088753_010 0.1506579183 - - PREDICTED: copper amine oxidase 1-like [Vitis vinifera]
5 Hb_000402_210 0.1556348838 - - hypothetical protein EUGRSUZ_B032971, partial [Eucalyptus grandis]
6 Hb_000451_070 0.1557462584 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
7 Hb_000016_100 0.167097814 transcription factor TF Family: TCP PREDICTED: transcription factor TCP19 [Jatropha curcas]
8 Hb_001902_190 0.168802013 - - PREDICTED: oxalate--CoA ligase [Jatropha curcas]
9 Hb_000227_060 0.1718169104 transcription factor TF Family: NF-YC hypothetical protein POPTR_0010s03730g [Populus trichocarpa]
10 Hb_189208_020 0.1721720649 - - LRX2, putative [Ricinus communis]
11 Hb_002097_200 0.1739546888 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
12 Hb_126380_010 0.1775787828 desease resistance Gene Name: NB-ARC ATP binding protein, putative [Ricinus communis]
13 Hb_028487_020 0.1789266589 - - hypothetical protein POPTR_0010s11880g [Populus trichocarpa]
14 Hb_000905_170 0.1796219813 desease resistance Gene Name: NB-ARC hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
15 Hb_000302_260 0.1810091295 - - hypothetical protein [Bruguiera gymnorhiza]
16 Hb_008511_100 0.1854351056 - - hypothetical protein POPTR_0009s11860g [Populus trichocarpa]
17 Hb_073395_010 0.1870099007 - - -
18 Hb_000025_340 0.1895653063 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62350 [Jatropha curcas]
19 Hb_141918_010 0.19025962 - - S-locus-specific glycoprotein S13 precursor, putative [Ricinus communis]
20 Hb_001433_140 0.1937321459 - - PREDICTED: phospholipase D p1 [Jatropha curcas]

Gene co-expression network

sample Hb_001183_010 Hb_001183_010 Hb_010727_010 Hb_010727_010 Hb_001183_010--Hb_010727_010 Hb_081745_010 Hb_081745_010 Hb_001183_010--Hb_081745_010 Hb_088753_010 Hb_088753_010 Hb_001183_010--Hb_088753_010 Hb_000402_210 Hb_000402_210 Hb_001183_010--Hb_000402_210 Hb_000451_070 Hb_000451_070 Hb_001183_010--Hb_000451_070 Hb_000016_100 Hb_000016_100 Hb_001183_010--Hb_000016_100 Hb_000025_340 Hb_000025_340 Hb_010727_010--Hb_000025_340 Hb_010727_010--Hb_081745_010 Hb_141918_010 Hb_141918_010 Hb_010727_010--Hb_141918_010 Hb_000087_050 Hb_000087_050 Hb_010727_010--Hb_000087_050 Hb_002272_080 Hb_002272_080 Hb_010727_010--Hb_002272_080 Hb_081745_010--Hb_141918_010 Hb_002234_190 Hb_002234_190 Hb_081745_010--Hb_002234_190 Hb_073395_010 Hb_073395_010 Hb_081745_010--Hb_073395_010 Hb_164945_040 Hb_164945_040 Hb_081745_010--Hb_164945_040 Hb_088753_010--Hb_000402_210 Hb_002097_200 Hb_002097_200 Hb_088753_010--Hb_002097_200 Hb_088753_010--Hb_000451_070 Hb_189208_020 Hb_189208_020 Hb_088753_010--Hb_189208_020 Hb_006788_140 Hb_006788_140 Hb_088753_010--Hb_006788_140 Hb_000302_260 Hb_000302_260 Hb_088753_010--Hb_000302_260 Hb_000402_210--Hb_000302_260 Hb_000402_210--Hb_000451_070 Hb_002042_130 Hb_002042_130 Hb_000402_210--Hb_002042_130 Hb_007382_120 Hb_007382_120 Hb_000402_210--Hb_007382_120 Hb_006538_080 Hb_006538_080 Hb_000402_210--Hb_006538_080 Hb_001894_050 Hb_001894_050 Hb_000451_070--Hb_001894_050 Hb_000451_070--Hb_189208_020 Hb_000451_070--Hb_002042_130 Hb_001153_180 Hb_001153_180 Hb_000451_070--Hb_001153_180 Hb_004032_270 Hb_004032_270 Hb_000016_100--Hb_004032_270 Hb_009838_050 Hb_009838_050 Hb_000016_100--Hb_009838_050 Hb_006582_020 Hb_006582_020 Hb_000016_100--Hb_006582_020 Hb_002435_110 Hb_002435_110 Hb_000016_100--Hb_002435_110 Hb_000016_100--Hb_000025_340 Hb_000390_150 Hb_000390_150 Hb_000016_100--Hb_000390_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.928414 3.7299 0.230393 0.669377 0.279535 1.19398
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.25306 2.10129 0.535139 1.76152 0.379132

CAGE analysis