Hb_001184_090

Information

Type -
Description -
Location Contig1184: 189339-197626
Sequence    

Annotation

kegg
ID pop:POPTR_0001s30580g
description POPTRDRAFT_1069657; TIP41-like family protein
nr
ID XP_012093066.1
description PREDICTED: TIP41-like protein [Jatropha curcas]
swissprot
ID Q54MI6
description TIP41-like protein OS=Dictyostelium discoideum GN=tiprl PE=3 SV=1
trembl
ID A0A067LJH9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16277 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05468: 191612-191719
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001184_090 0.0 - - PREDICTED: TIP41-like protein [Jatropha curcas]
2 Hb_002105_090 0.0712411993 - - Rab4 [Hevea brasiliensis]
3 Hb_000494_020 0.0725141362 - - PREDICTED: actin-related protein 2/3 complex subunit 5A [Jatropha curcas]
4 Hb_000000_170 0.0730855012 - - defender against cell death, putative [Ricinus communis]
5 Hb_004800_230 0.0760505596 - - PREDICTED: MIP18 family protein At1g68310 [Jatropha curcas]
6 Hb_000832_140 0.0764145626 - - actin depolymerizing factor 4 [Hevea brasiliensis]
7 Hb_000454_050 0.0780915774 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 [Vitis vinifera]
8 Hb_000174_090 0.0782884866 - - PREDICTED: probable ubiquitin-like-specific protease 2A isoform X1 [Jatropha curcas]
9 Hb_001489_060 0.0795537133 - - PREDICTED: uncharacterized protein LOC105649778 isoform X2 [Jatropha curcas]
10 Hb_156635_030 0.0808902945 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial isoform X1 [Nelumbo nucifera]
11 Hb_000007_100 0.0820695674 - - PREDICTED: uncharacterized protein LOC105640717 [Jatropha curcas]
12 Hb_063716_050 0.0834249607 - - PREDICTED: uncharacterized protein LOC105634866 [Jatropha curcas]
13 Hb_000926_250 0.0841750282 - - hypothetical protein POPTR_0011s08930g [Populus trichocarpa]
14 Hb_002107_130 0.0842376685 - - protein with unknown function [Ricinus communis]
15 Hb_128048_010 0.0860980273 - - small nuclear ribonucleoprotein U)1a,U)2b, putative [Ricinus communis]
16 Hb_001246_090 0.0864044952 - - PREDICTED: acyl carrier protein 1, mitochondrial [Jatropha curcas]
17 Hb_001328_040 0.0866320678 - - PREDICTED: uncharacterized protein LOC105636146 [Jatropha curcas]
18 Hb_001604_080 0.0918885899 - - PREDICTED: uncharacterized protein LOC105638437 [Jatropha curcas]
19 Hb_000103_560 0.0922064436 - - ADP-ribosylation factor, putative [Ricinus communis]
20 Hb_003050_080 0.0940265823 - - 40S ribosomal protein S14, putative [Ricinus communis]

Gene co-expression network

sample Hb_001184_090 Hb_001184_090 Hb_002105_090 Hb_002105_090 Hb_001184_090--Hb_002105_090 Hb_000494_020 Hb_000494_020 Hb_001184_090--Hb_000494_020 Hb_000000_170 Hb_000000_170 Hb_001184_090--Hb_000000_170 Hb_004800_230 Hb_004800_230 Hb_001184_090--Hb_004800_230 Hb_000832_140 Hb_000832_140 Hb_001184_090--Hb_000832_140 Hb_000454_050 Hb_000454_050 Hb_001184_090--Hb_000454_050 Hb_002105_090--Hb_000494_020 Hb_004324_310 Hb_004324_310 Hb_002105_090--Hb_004324_310 Hb_032717_080 Hb_032717_080 Hb_002105_090--Hb_032717_080 Hb_070986_010 Hb_070986_010 Hb_002105_090--Hb_070986_010 Hb_010407_040 Hb_010407_040 Hb_002105_090--Hb_010407_040 Hb_000494_020--Hb_010407_040 Hb_003363_110 Hb_003363_110 Hb_000494_020--Hb_003363_110 Hb_000933_180 Hb_000933_180 Hb_000494_020--Hb_000933_180 Hb_000163_160 Hb_000163_160 Hb_000494_020--Hb_000163_160 Hb_001246_090 Hb_001246_090 Hb_000494_020--Hb_001246_090 Hb_000505_140 Hb_000505_140 Hb_000000_170--Hb_000505_140 Hb_128048_010 Hb_128048_010 Hb_000000_170--Hb_128048_010 Hb_012022_120 Hb_012022_120 Hb_000000_170--Hb_012022_120 Hb_000926_300 Hb_000926_300 Hb_000000_170--Hb_000926_300 Hb_002900_160 Hb_002900_160 Hb_000000_170--Hb_002900_160 Hb_000329_030 Hb_000329_030 Hb_004800_230--Hb_000329_030 Hb_024071_020 Hb_024071_020 Hb_004800_230--Hb_024071_020 Hb_004800_230--Hb_000163_160 Hb_003126_050 Hb_003126_050 Hb_004800_230--Hb_003126_050 Hb_004800_230--Hb_000494_020 Hb_000174_090 Hb_000174_090 Hb_000832_140--Hb_000174_090 Hb_002214_040 Hb_002214_040 Hb_000832_140--Hb_002214_040 Hb_003050_080 Hb_003050_080 Hb_000832_140--Hb_003050_080 Hb_000103_560 Hb_000103_560 Hb_000832_140--Hb_000103_560 Hb_063716_050 Hb_063716_050 Hb_000832_140--Hb_063716_050 Hb_000529_190 Hb_000529_190 Hb_000832_140--Hb_000529_190 Hb_024682_010 Hb_024682_010 Hb_000454_050--Hb_024682_010 Hb_000454_050--Hb_000494_020 Hb_004204_120 Hb_004204_120 Hb_000454_050--Hb_004204_120 Hb_002205_080 Hb_002205_080 Hb_000454_050--Hb_002205_080 Hb_008175_040 Hb_008175_040 Hb_000454_050--Hb_008175_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.9551 0.599126 1.81102 2.07378 3.49318 3.1348
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.13331 5.1857 2.62091 1.89409 0.583429

CAGE analysis