Hb_001184_100

Information

Type -
Description -
Location Contig1184: 198804-199400
Sequence    

Annotation

kegg
ID pop:POPTR_0001s30590g
description POPTRDRAFT_753019; hypothetical protein
nr
ID XP_011030383.1
description PREDICTED: zinc finger protein 4-like [Populus euphratica]
swissprot
ID Q39266
description Zinc finger protein 7 OS=Arabidopsis thaliana GN=ZFP7 PE=2 SV=1
trembl
ID B9GHU0
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s30590g PE=4 SV=2
Gene Ontology
ID GO:0046872
description zinc finger protein 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001184_100 0.0 - - PREDICTED: zinc finger protein 4-like [Populus euphratica]
2 Hb_001329_220 0.1209406615 - - conserved hypothetical protein [Ricinus communis]
3 Hb_011472_040 0.1210303202 - - PREDICTED: clathrin light chain 3 [Jatropha curcas]
4 Hb_000500_090 0.1217569761 - - nucleoside diphosphate kinase 2 [Hevea brasiliensis]
5 Hb_003120_030 0.1302115961 - - PREDICTED: vacuolar protein sorting-associated protein 35B isoform X2 [Jatropha curcas]
6 Hb_000272_100 0.1367070132 - - PREDICTED: uncharacterized protein LOC103949110 [Pyrus x bretschneideri]
7 Hb_002333_080 0.1372296754 transcription factor TF Family: TCP PREDICTED: transcription factor TCP20-like [Populus euphratica]
8 Hb_123475_010 0.1383829522 - - PREDICTED: hepatocyte growth factor-regulated tyrosine kinase substrate [Jatropha curcas]
9 Hb_004221_010 0.1406840369 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 19-like [Jatropha curcas]
10 Hb_000879_140 0.1412919615 - - PREDICTED: uncharacterized protein DDB_G0283697-like isoform X2 [Jatropha curcas]
11 Hb_000997_060 0.1417954039 - - PREDICTED: DNA repair protein XRCC4 [Jatropha curcas]
12 Hb_012052_060 0.1424067614 - - hypothetical protein POPTR_0018s10190g [Populus trichocarpa]
13 Hb_005215_030 0.1424694533 - - FAD-dependent oxidoreductase family protein [Populus trichocarpa]
14 Hb_004718_020 0.1424808884 - - Potassium channel KAT3, putative [Ricinus communis]
15 Hb_003159_080 0.1431733448 - - PREDICTED: uncharacterized protein LOC105639276 [Jatropha curcas]
16 Hb_000483_360 0.1438020717 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 26 [Jatropha curcas]
17 Hb_000169_010 0.1438931035 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 [Jatropha curcas]
18 Hb_000300_280 0.1439135405 - - PREDICTED: BTB/POZ and MATH domain-containing protein 4 isoform X1 [Jatropha curcas]
19 Hb_055590_010 0.1447950764 - - conserved hypothetical protein [Ricinus communis]
20 Hb_003086_020 0.1448758954 - - hypothetical protein JCGZ_06091 [Jatropha curcas]

Gene co-expression network

sample Hb_001184_100 Hb_001184_100 Hb_001329_220 Hb_001329_220 Hb_001184_100--Hb_001329_220 Hb_011472_040 Hb_011472_040 Hb_001184_100--Hb_011472_040 Hb_000500_090 Hb_000500_090 Hb_001184_100--Hb_000500_090 Hb_003120_030 Hb_003120_030 Hb_001184_100--Hb_003120_030 Hb_000272_100 Hb_000272_100 Hb_001184_100--Hb_000272_100 Hb_002333_080 Hb_002333_080 Hb_001184_100--Hb_002333_080 Hb_000169_010 Hb_000169_010 Hb_001329_220--Hb_000169_010 Hb_001329_220--Hb_000500_090 Hb_007254_040 Hb_007254_040 Hb_001329_220--Hb_007254_040 Hb_000032_570 Hb_000032_570 Hb_001329_220--Hb_000032_570 Hb_004048_070 Hb_004048_070 Hb_001329_220--Hb_004048_070 Hb_004970_110 Hb_004970_110 Hb_001329_220--Hb_004970_110 Hb_084934_010 Hb_084934_010 Hb_011472_040--Hb_084934_010 Hb_006189_010 Hb_006189_010 Hb_011472_040--Hb_006189_010 Hb_001975_070 Hb_001975_070 Hb_011472_040--Hb_001975_070 Hb_030312_040 Hb_030312_040 Hb_011472_040--Hb_030312_040 Hb_001655_070 Hb_001655_070 Hb_011472_040--Hb_001655_070 Hb_012052_060 Hb_012052_060 Hb_011472_040--Hb_012052_060 Hb_000500_090--Hb_002333_080 Hb_007317_180 Hb_007317_180 Hb_000500_090--Hb_007317_180 Hb_000500_090--Hb_007254_040 Hb_000162_170 Hb_000162_170 Hb_000500_090--Hb_000162_170 Hb_000500_090--Hb_004970_110 Hb_003120_030--Hb_001329_220 Hb_003120_030--Hb_000500_090 Hb_003120_030--Hb_002333_080 Hb_003159_080 Hb_003159_080 Hb_003120_030--Hb_003159_080 Hb_003976_010 Hb_003976_010 Hb_003120_030--Hb_003976_010 Hb_003120_030--Hb_004048_070 Hb_033491_010 Hb_033491_010 Hb_000272_100--Hb_033491_010 Hb_159558_030 Hb_159558_030 Hb_000272_100--Hb_159558_030 Hb_000732_260 Hb_000732_260 Hb_000272_100--Hb_000732_260 Hb_003086_110 Hb_003086_110 Hb_000272_100--Hb_003086_110 Hb_003086_020 Hb_003086_020 Hb_000272_100--Hb_003086_020 Hb_004607_140 Hb_004607_140 Hb_000272_100--Hb_004607_140 Hb_002333_080--Hb_004970_110 Hb_002333_080--Hb_001329_220 Hb_002333_080--Hb_007317_180 Hb_011828_020 Hb_011828_020 Hb_002333_080--Hb_011828_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
40.1929 10.0683 0.855259 8.67053 34.5785 32.6289
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
44.3553 24.0655 13.5538 30.3052 4.48343

CAGE analysis