Hb_001184_110

Information

Type -
Description -
Location Contig1184: 207870-212091
Sequence    

Annotation

kegg
ID pop:POPTR_0009s09640g
description hypothetical protein
nr
ID XP_012093063.1
description PREDICTED: uncharacterized protein LOC105650729 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L7P6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16275 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05472: 207812-212101
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001184_110 0.0 - - PREDICTED: uncharacterized protein LOC105650729 isoform X2 [Jatropha curcas]
2 Hb_007101_130 0.0786510428 - - conserved hypothetical protein [Ricinus communis]
3 Hb_006846_110 0.0869449518 - - PREDICTED: pentatricopeptide repeat-containing protein At5g61800 [Jatropha curcas]
4 Hb_008453_090 0.0886661468 - - hypothetical protein JCGZ_08177 [Jatropha curcas]
5 Hb_000671_150 0.107193276 - - PREDICTED: signal recognition particle 19 kDa protein-like [Jatropha curcas]
6 Hb_000935_050 0.1079137793 - - PREDICTED: pentatricopeptide repeat-containing protein At3g49710 [Jatropha curcas]
7 Hb_007672_010 0.1111164533 - - PREDICTED: uncharacterized protein LOC105639669 isoform X1 [Jatropha curcas]
8 Hb_016065_010 0.1111395367 - - PREDICTED: pentatricopeptide repeat-containing protein At5g08305 [Jatropha curcas]
9 Hb_000193_290 0.1129081144 - - hypothetical protein JCGZ_11661 [Jatropha curcas]
10 Hb_005694_080 0.1137713131 - - DNA-directed RNA polymerase III, putative [Ricinus communis]
11 Hb_004951_040 0.1149083631 - - PREDICTED: pentatricopeptide repeat-containing protein At1g31790-like [Jatropha curcas]
12 Hb_002890_280 0.115983764 - - hypothetical protein PRUPE_ppa009665mg [Prunus persica]
13 Hb_003018_190 0.1192685564 - - PREDICTED: pentatricopeptide repeat-containing protein At4g31070, mitochondrial [Jatropha curcas]
14 Hb_000853_110 0.1210836664 - - PREDICTED: 60S ribosomal protein L19-1 [Jatropha curcas]
15 Hb_000239_010 0.1223462762 - - WD-repeat protein, putative [Ricinus communis]
16 Hb_005333_130 0.122486576 - - conserved hypothetical protein [Ricinus communis]
17 Hb_178968_110 0.1226761072 - - PREDICTED: uncharacterized protein LOC105630268 [Jatropha curcas]
18 Hb_000200_340 0.1232170503 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
19 Hb_000022_230 0.1240529663 - - hypothetical protein RCOM_0803470 [Ricinus communis]
20 Hb_003018_200 0.1242953658 - - inositol or phosphatidylinositol kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001184_110 Hb_001184_110 Hb_007101_130 Hb_007101_130 Hb_001184_110--Hb_007101_130 Hb_006846_110 Hb_006846_110 Hb_001184_110--Hb_006846_110 Hb_008453_090 Hb_008453_090 Hb_001184_110--Hb_008453_090 Hb_000671_150 Hb_000671_150 Hb_001184_110--Hb_000671_150 Hb_000935_050 Hb_000935_050 Hb_001184_110--Hb_000935_050 Hb_007672_010 Hb_007672_010 Hb_001184_110--Hb_007672_010 Hb_007101_130--Hb_007672_010 Hb_003018_200 Hb_003018_200 Hb_007101_130--Hb_003018_200 Hb_027472_180 Hb_027472_180 Hb_007101_130--Hb_027472_180 Hb_007101_130--Hb_008453_090 Hb_000376_050 Hb_000376_050 Hb_007101_130--Hb_000376_050 Hb_131864_040 Hb_131864_040 Hb_006846_110--Hb_131864_040 Hb_003018_190 Hb_003018_190 Hb_006846_110--Hb_003018_190 Hb_000223_150 Hb_000223_150 Hb_006846_110--Hb_000223_150 Hb_007747_200 Hb_007747_200 Hb_006846_110--Hb_007747_200 Hb_002603_160 Hb_002603_160 Hb_006846_110--Hb_002603_160 Hb_006846_110--Hb_008453_090 Hb_004951_040 Hb_004951_040 Hb_008453_090--Hb_004951_040 Hb_016065_010 Hb_016065_010 Hb_008453_090--Hb_016065_010 Hb_000193_290 Hb_000193_290 Hb_008453_090--Hb_000193_290 Hb_055062_030 Hb_055062_030 Hb_008453_090--Hb_055062_030 Hb_008453_090--Hb_003018_200 Hb_005333_130 Hb_005333_130 Hb_008453_090--Hb_005333_130 Hb_001881_020 Hb_001881_020 Hb_000671_150--Hb_001881_020 Hb_000205_270 Hb_000205_270 Hb_000671_150--Hb_000205_270 Hb_000671_150--Hb_000193_290 Hb_001109_020 Hb_001109_020 Hb_000671_150--Hb_001109_020 Hb_008289_060 Hb_008289_060 Hb_000671_150--Hb_008289_060 Hb_000671_150--Hb_003018_190 Hb_119600_040 Hb_119600_040 Hb_000935_050--Hb_119600_040 Hb_007075_050 Hb_007075_050 Hb_000935_050--Hb_007075_050 Hb_000019_130 Hb_000019_130 Hb_000935_050--Hb_000019_130 Hb_027472_170 Hb_027472_170 Hb_000935_050--Hb_027472_170 Hb_000297_200 Hb_000297_200 Hb_000935_050--Hb_000297_200 Hb_000935_050--Hb_007747_200 Hb_007672_010--Hb_000376_050 Hb_021650_030 Hb_021650_030 Hb_007672_010--Hb_021650_030 Hb_000056_340 Hb_000056_340 Hb_007672_010--Hb_000056_340 Hb_002890_280 Hb_002890_280 Hb_007672_010--Hb_002890_280 Hb_002078_450 Hb_002078_450 Hb_007672_010--Hb_002078_450
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.3262 11.9376 6.98748 4.0223 19.7784 31.2783
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.0412 46.8394 47.7583 20.9003 3.97149

CAGE analysis