Hb_001186_060

Information

Type -
Description -
Location Contig1186: 57131-58197
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001186_060 0.0 - - -
2 Hb_001930_070 0.0900871088 - - -
3 Hb_000371_110 0.0957093489 - - -
4 Hb_006499_010 0.0999927399 - - -
5 Hb_000163_290 0.1052457535 - - PREDICTED: nucleolar protein 16 [Jatropha curcas]
6 Hb_006189_010 0.1076312427 - - -
7 Hb_000033_050 0.1127500497 - - -
8 Hb_001158_030 0.1143147931 - - -
9 Hb_011716_040 0.1238848132 - - -
10 Hb_002783_230 0.1284918693 - - neutral/alkaline invertase [Manihot esculenta]
11 Hb_000567_200 0.1314528559 - - PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 [Jatropha curcas]
12 Hb_011472_040 0.1327383298 - - PREDICTED: clathrin light chain 3 [Jatropha curcas]
13 Hb_001514_200 0.1328568829 - - PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like [Jatropha curcas]
14 Hb_007849_040 0.1340439901 - - PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like [Vitis vinifera]
15 Hb_000117_040 0.1349188624 - - 30S ribosomal protein S6A [Hevea brasiliensis]
16 Hb_005214_110 0.135378231 - - -
17 Hb_007245_090 0.1362610645 - - -
18 Hb_000138_040 0.1375086625 - - PREDICTED: uncharacterized protein LOC105646531 [Jatropha curcas]
19 Hb_018133_120 0.1379783808 transcription factor TF Family: HB homeobox protein knotted-1, putative [Ricinus communis]
20 Hb_000953_140 0.1387750196 transcription factor TF Family: Trihelix Duplicated homeodomain-like superfamily protein, putative [Theobroma cacao]

Gene co-expression network

sample Hb_001186_060 Hb_001186_060 Hb_001930_070 Hb_001930_070 Hb_001186_060--Hb_001930_070 Hb_000371_110 Hb_000371_110 Hb_001186_060--Hb_000371_110 Hb_006499_010 Hb_006499_010 Hb_001186_060--Hb_006499_010 Hb_000163_290 Hb_000163_290 Hb_001186_060--Hb_000163_290 Hb_006189_010 Hb_006189_010 Hb_001186_060--Hb_006189_010 Hb_000033_050 Hb_000033_050 Hb_001186_060--Hb_000033_050 Hb_001930_070--Hb_006499_010 Hb_007245_090 Hb_007245_090 Hb_001930_070--Hb_007245_090 Hb_001930_070--Hb_000033_050 Hb_000014_100 Hb_000014_100 Hb_001930_070--Hb_000014_100 Hb_002924_050 Hb_002924_050 Hb_001930_070--Hb_002924_050 Hb_001433_170 Hb_001433_170 Hb_000371_110--Hb_001433_170 Hb_000117_040 Hb_000117_040 Hb_000371_110--Hb_000117_040 Hb_000371_110--Hb_000163_290 Hb_000371_110--Hb_006499_010 Hb_000138_040 Hb_000138_040 Hb_000371_110--Hb_000138_040 Hb_006499_010--Hb_000163_290 Hb_006499_010--Hb_007245_090 Hb_006499_010--Hb_000033_050 Hb_003747_240 Hb_003747_240 Hb_006499_010--Hb_003747_240 Hb_000163_290--Hb_000117_040 Hb_001518_020 Hb_001518_020 Hb_000163_290--Hb_001518_020 Hb_000163_290--Hb_003747_240 Hb_084934_010 Hb_084934_010 Hb_006189_010--Hb_084934_010 Hb_180333_010 Hb_180333_010 Hb_006189_010--Hb_180333_010 Hb_011472_040 Hb_011472_040 Hb_006189_010--Hb_011472_040 Hb_004607_150 Hb_004607_150 Hb_006189_010--Hb_004607_150 Hb_157854_010 Hb_157854_010 Hb_006189_010--Hb_157854_010 Hb_000033_050--Hb_000163_290 Hb_011716_040 Hb_011716_040 Hb_000033_050--Hb_011716_040 Hb_000033_050--Hb_000371_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.1659 7.38317 0.418027 0.0660329 17.7528 12.1711
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.8506 12.941 9.21612 5.35851 0.370099

CAGE analysis