Hb_001186_080

Information

Type -
Description -
Location Contig1186: 64087-64756
Sequence    

Annotation

kegg
ID sot:102593658
description F-box protein FBW2-like
nr
ID XP_010261892.1
description PREDICTED: F-box protein FBW2-like [Nelumbo nucifera]
swissprot
ID Q9M0U9
description F-box protein SKIP19 OS=Arabidopsis thaliana GN=SKIP19 PE=1 SV=1
trembl
ID A0A0B0NRC7
description F-box FBW2-like protein OS=Gossypium arboreum GN=F383_05088 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001186_080 0.0 - - PREDICTED: F-box protein FBW2-like [Nelumbo nucifera]
2 Hb_000792_120 0.198390502 - - PREDICTED: mitochondrial uncoupling protein 1 isoform X2 [Jatropha curcas]
3 Hb_168711_010 0.2138172311 - - PREDICTED: (DL)-glycerol-3-phosphatase 2 [Sesamum indicum]
4 Hb_000032_350 0.2179629782 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000300_210 0.2194512331 - - gd2b, putative [Ricinus communis]
6 Hb_001101_010 0.2221696943 - - hypothetical protein POPTR_0004s18730g [Populus trichocarpa]
7 Hb_004931_010 0.2240954032 - - inosine triphosphate pyrophosphatase, putative [Ricinus communis]
8 Hb_003592_070 0.2267378765 - - -
9 Hb_012799_020 0.2361392236 - - metal ion binding protein, putative [Ricinus communis]
10 Hb_001140_240 0.2389502332 - - metal ion binding protein, putative [Ricinus communis]
11 Hb_000500_210 0.2397638734 - - -
12 Hb_003376_210 0.2437870182 - - -
13 Hb_003198_010 0.2449776529 - - Valine--tRNA ligase [Gossypium arboreum]
14 Hb_008066_030 0.2453546004 - - PREDICTED: uncharacterized protein LOC105631333 [Jatropha curcas]
15 Hb_032660_020 0.2476239188 - - PREDICTED: F-box protein At5g49610-like [Jatropha curcas]
16 Hb_001434_070 0.2492833232 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM8 [Jatropha curcas]
17 Hb_006588_010 0.2500379326 - - -
18 Hb_148909_020 0.2509226236 - - PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Jatropha curcas]
19 Hb_008887_040 0.2565480425 - - Ribonuclease P family protein / Rpp14 family protein isoform 1 [Theobroma cacao]
20 Hb_000387_060 0.2583482125 - - -

Gene co-expression network

sample Hb_001186_080 Hb_001186_080 Hb_000792_120 Hb_000792_120 Hb_001186_080--Hb_000792_120 Hb_168711_010 Hb_168711_010 Hb_001186_080--Hb_168711_010 Hb_000032_350 Hb_000032_350 Hb_001186_080--Hb_000032_350 Hb_000300_210 Hb_000300_210 Hb_001186_080--Hb_000300_210 Hb_001101_010 Hb_001101_010 Hb_001186_080--Hb_001101_010 Hb_004931_010 Hb_004931_010 Hb_001186_080--Hb_004931_010 Hb_012022_100 Hb_012022_100 Hb_000792_120--Hb_012022_100 Hb_001579_140 Hb_001579_140 Hb_000792_120--Hb_001579_140 Hb_000792_120--Hb_000300_210 Hb_000329_660 Hb_000329_660 Hb_000792_120--Hb_000329_660 Hb_000387_060 Hb_000387_060 Hb_000792_120--Hb_000387_060 Hb_008066_030 Hb_008066_030 Hb_000792_120--Hb_008066_030 Hb_008887_040 Hb_008887_040 Hb_168711_010--Hb_008887_040 Hb_000635_080 Hb_000635_080 Hb_168711_010--Hb_000635_080 Hb_002260_020 Hb_002260_020 Hb_168711_010--Hb_002260_020 Hb_002248_100 Hb_002248_100 Hb_168711_010--Hb_002248_100 Hb_000172_420 Hb_000172_420 Hb_168711_010--Hb_000172_420 Hb_001434_070 Hb_001434_070 Hb_168711_010--Hb_001434_070 Hb_000696_220 Hb_000696_220 Hb_000032_350--Hb_000696_220 Hb_000853_240 Hb_000853_240 Hb_000032_350--Hb_000853_240 Hb_000963_030 Hb_000963_030 Hb_000032_350--Hb_000963_030 Hb_003198_010 Hb_003198_010 Hb_000032_350--Hb_003198_010 Hb_007943_140 Hb_007943_140 Hb_000032_350--Hb_007943_140 Hb_011689_050 Hb_011689_050 Hb_000032_350--Hb_011689_050 Hb_001433_100 Hb_001433_100 Hb_000300_210--Hb_001433_100 Hb_032202_250 Hb_032202_250 Hb_000300_210--Hb_032202_250 Hb_003226_240 Hb_003226_240 Hb_000300_210--Hb_003226_240 Hb_001425_110 Hb_001425_110 Hb_000300_210--Hb_001425_110 Hb_000300_210--Hb_000329_660 Hb_002918_300 Hb_002918_300 Hb_001101_010--Hb_002918_300 Hb_001101_010--Hb_000032_350 Hb_001007_050 Hb_001007_050 Hb_001101_010--Hb_001007_050 Hb_001101_010--Hb_001425_110 Hb_032660_020 Hb_032660_020 Hb_001101_010--Hb_032660_020 Hb_010172_100 Hb_010172_100 Hb_001101_010--Hb_010172_100 Hb_001017_080 Hb_001017_080 Hb_004931_010--Hb_001017_080 Hb_003322_010 Hb_003322_010 Hb_004931_010--Hb_003322_010 Hb_000191_030 Hb_000191_030 Hb_004931_010--Hb_000191_030 Hb_153216_010 Hb_153216_010 Hb_004931_010--Hb_153216_010 Hb_001504_050 Hb_001504_050 Hb_004931_010--Hb_001504_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.18556 0.106519 0.344318 0.0854133 0.241256 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.4679 2.7369 0.191249 0.333419 0

CAGE analysis