Hb_001186_110

Information

Type -
Description -
Location Contig1186: 99327-103247
Sequence    

Annotation

kegg
ID rcu:RCOM_0596300
description o-methyltransferase, putative (EC:2.1.1.68)
nr
ID KDP30064.1
description hypothetical protein JCGZ_18389 [Jatropha curcas]
swissprot
ID Q43609
description Caffeic acid 3-O-methyltransferase OS=Prunus dulcis GN=COMT1 PE=2 SV=1
trembl
ID A0A067KDX9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18389 PE=4 SV=1
Gene Ontology
ID GO:0005634
description caffeic acid o-methyltransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05513: 99379-102980 , PASA_asmbl_05514: 102198-102579
cDNA
(Sanger)
(ID:Location)		 006_C09.ab1: 99925-102685 , 006_F02.ab1: 99379-101954 , 011_A16.ab1: 99534-102201

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001186_110 0.0 - - hypothetical protein JCGZ_18389 [Jatropha curcas]
2 Hb_000054_010 0.1359715614 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
3 Hb_003001_050 0.1466744993 - - hypothetical protein RCOM_1749890 [Ricinus communis]
4 Hb_000455_070 0.156193025 - - PREDICTED: LOW QUALITY PROTEIN: carboxymethylenebutenolidase homolog [Jatropha curcas]
5 Hb_002203_020 0.1604606768 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000300_420 0.1606446579 - - 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative [Ricinus communis]
7 Hb_174541_030 0.1607404366 - - Cytochrome P450, family 98, subfamily A, polypeptide 3 [Theobroma cacao]
8 Hb_030565_100 0.1640399592 - - serine hydroxymethyltransferase, putative [Ricinus communis]
9 Hb_002110_290 0.1670331305 - - ring finger protein, putative [Ricinus communis]
10 Hb_001616_010 0.1688153848 - - hypothetical protein RCOM_1749890 [Ricinus communis]
11 Hb_004117_020 0.1700085694 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000077_100 0.1791140719 - - PREDICTED: mannan endo-1,4-beta-mannosidase 2-like isoform X1 [Jatropha curcas]
13 Hb_005529_020 0.1792150243 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 32 [Jatropha curcas]
14 Hb_001296_010 0.1793524759 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001329_180 0.1812293537 - - S-adenosylmethionine synthetase 1 family protein [Populus trichocarpa]
16 Hb_000463_120 0.182749854 - - LRR receptor-like serine/threonine-protein kinase, putative [Theobroma cacao]
17 Hb_179960_010 0.1840539236 - - PREDICTED: E3 ubiquitin-protein ligase ATL4-like [Jatropha curcas]
18 Hb_003185_070 0.1872954341 - - Plant natriuretic peptide A [Theobroma cacao]
19 Hb_002900_180 0.1886496246 transcription factor TF Family: LIM LIM1 [Hevea brasiliensis]
20 Hb_000236_190 0.1896486806 - - PREDICTED: adenosylhomocysteinase 1 [Jatropha curcas]

Gene co-expression network

sample Hb_001186_110 Hb_001186_110 Hb_000054_010 Hb_000054_010 Hb_001186_110--Hb_000054_010 Hb_003001_050 Hb_003001_050 Hb_001186_110--Hb_003001_050 Hb_000455_070 Hb_000455_070 Hb_001186_110--Hb_000455_070 Hb_002203_020 Hb_002203_020 Hb_001186_110--Hb_002203_020 Hb_000300_420 Hb_000300_420 Hb_001186_110--Hb_000300_420 Hb_174541_030 Hb_174541_030 Hb_001186_110--Hb_174541_030 Hb_030565_100 Hb_030565_100 Hb_000054_010--Hb_030565_100 Hb_010883_180 Hb_010883_180 Hb_000054_010--Hb_010883_180 Hb_007311_050 Hb_007311_050 Hb_000054_010--Hb_007311_050 Hb_000054_010--Hb_174541_030 Hb_007574_040 Hb_007574_040 Hb_000054_010--Hb_007574_040 Hb_000015_190 Hb_000015_190 Hb_003001_050--Hb_000015_190 Hb_001616_010 Hb_001616_010 Hb_003001_050--Hb_001616_010 Hb_000561_040 Hb_000561_040 Hb_003001_050--Hb_000561_040 Hb_002616_020 Hb_002616_020 Hb_003001_050--Hb_002616_020 Hb_001616_100 Hb_001616_100 Hb_003001_050--Hb_001616_100 Hb_003470_110 Hb_003470_110 Hb_000455_070--Hb_003470_110 Hb_005539_140 Hb_005539_140 Hb_000455_070--Hb_005539_140 Hb_000455_070--Hb_030565_100 Hb_002110_290 Hb_002110_290 Hb_000455_070--Hb_002110_290 Hb_000236_180 Hb_000236_180 Hb_000455_070--Hb_000236_180 Hb_001195_090 Hb_001195_090 Hb_000455_070--Hb_001195_090 Hb_004117_020 Hb_004117_020 Hb_002203_020--Hb_004117_020 Hb_005000_280 Hb_005000_280 Hb_002203_020--Hb_005000_280 Hb_002809_080 Hb_002809_080 Hb_002203_020--Hb_002809_080 Hb_000076_280 Hb_000076_280 Hb_002203_020--Hb_000076_280 Hb_001769_070 Hb_001769_070 Hb_002203_020--Hb_001769_070 Hb_027400_020 Hb_027400_020 Hb_002203_020--Hb_027400_020 Hb_000236_190 Hb_000236_190 Hb_000300_420--Hb_000236_190 Hb_000806_130 Hb_000806_130 Hb_000300_420--Hb_000806_130 Hb_000077_100 Hb_000077_100 Hb_000300_420--Hb_000077_100 Hb_001329_180 Hb_001329_180 Hb_000300_420--Hb_001329_180 Hb_000300_420--Hb_000236_180 Hb_000580_110 Hb_000580_110 Hb_000300_420--Hb_000580_110 Hb_174541_030--Hb_004117_020 Hb_174541_030--Hb_030565_100 Hb_000457_120 Hb_000457_120 Hb_174541_030--Hb_000457_120 Hb_000030_130 Hb_000030_130 Hb_174541_030--Hb_000030_130 Hb_174541_030--Hb_002203_020 Hb_000392_540 Hb_000392_540 Hb_174541_030--Hb_000392_540
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
29.9302 69.1911 137.633 1498.89 38.0846 38.3124
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
49.3232 14.1153 21.4895 220.326 244.921

CAGE analysis