Hb_001186_120

Information

Type -
Description -
Location Contig1186: 103058-114138
Sequence    

Annotation

kegg
ID cic:CICLE_v10022725mg
description hypothetical protein
nr
ID XP_012081297.1
description PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase 5 [Jatropha curcas]
swissprot
ID D4N501
description Probable 2-oxoglutarate/Fe(II)-dependent dioxygenase OS=Papaver somniferum GN=DIOX2 PE=2 SV=1
trembl
ID A0A067K4S0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18383 PE=3 SV=1
Gene Ontology
ID GO:0005622
description flavanone 3-dioxygenase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05515: 103022-114143
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001186_120 0.0 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase 5 [Jatropha curcas]
2 Hb_000215_130 0.06782197 - - PREDICTED: probable pectinesterase 53 [Jatropha curcas]
3 Hb_001226_100 0.0938517572 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
4 Hb_000880_040 0.1009740621 - - -
5 Hb_004709_030 0.1051907598 - - PREDICTED: receptor-like protein 12 [Vitis vinifera]
6 Hb_009102_010 0.1167477625 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
7 Hb_000336_280 0.1182168944 - - PREDICTED: uncharacterized protein LOC105632845 [Jatropha curcas]
8 Hb_170023_010 0.121482187 - - hypothetical protein EUGRSUZ_C03837 [Eucalyptus grandis]
9 Hb_004324_320 0.1219557777 - - PREDICTED: probable inactive receptor kinase At4g23740 [Jatropha curcas]
10 Hb_123560_020 0.1227399959 - - hypothetical protein JCGZ_12464 [Jatropha curcas]
11 Hb_000365_440 0.1229663782 - - Acid phosphatase 1 precursor, putative [Ricinus communis]
12 Hb_000018_120 0.1249538874 - - ankyrin repeat-containing protein, putative [Ricinus communis]
13 Hb_003592_060 0.1268313319 - - hypothetical protein F383_11017 [Gossypium arboreum]
14 Hb_019278_010 0.1323145013 - - PREDICTED: uncharacterized protein LOC105638282 [Jatropha curcas]
15 Hb_000087_120 0.1342039526 - - AMP dependent CoA ligase, putative [Ricinus communis]
16 Hb_002379_060 0.136269403 - - PREDICTED: MACPF domain-containing protein At1g14780 [Jatropha curcas]
17 Hb_011440_010 0.1364427182 - - PREDICTED: metalloendoproteinase 1-like [Pyrus x bretschneideri]
18 Hb_170878_070 0.1375003418 - - hypothetical protein EUGRSUZ_L008133, partial [Eucalyptus grandis]
19 Hb_000189_160 0.1379794709 - - PREDICTED: GDP-mannose 3,5-epimerase 2 [Eucalyptus grandis]
20 Hb_006266_010 0.1382275721 - - unnamed protein product [Vitis vinifera]

Gene co-expression network

sample Hb_001186_120 Hb_001186_120 Hb_000215_130 Hb_000215_130 Hb_001186_120--Hb_000215_130 Hb_001226_100 Hb_001226_100 Hb_001186_120--Hb_001226_100 Hb_000880_040 Hb_000880_040 Hb_001186_120--Hb_000880_040 Hb_004709_030 Hb_004709_030 Hb_001186_120--Hb_004709_030 Hb_009102_010 Hb_009102_010 Hb_001186_120--Hb_009102_010 Hb_000336_280 Hb_000336_280 Hb_001186_120--Hb_000336_280 Hb_000215_130--Hb_001226_100 Hb_000215_130--Hb_000336_280 Hb_000215_130--Hb_004709_030 Hb_005333_210 Hb_005333_210 Hb_000215_130--Hb_005333_210 Hb_001832_110 Hb_001832_110 Hb_000215_130--Hb_001832_110 Hb_001226_100--Hb_000336_280 Hb_001226_100--Hb_001832_110 Hb_001439_040 Hb_001439_040 Hb_001226_100--Hb_001439_040 Hb_001226_100--Hb_005333_210 Hb_009693_010 Hb_009693_010 Hb_000880_040--Hb_009693_010 Hb_000260_750 Hb_000260_750 Hb_000880_040--Hb_000260_750 Hb_000365_440 Hb_000365_440 Hb_000880_040--Hb_000365_440 Hb_001244_070 Hb_001244_070 Hb_000880_040--Hb_001244_070 Hb_170023_010 Hb_170023_010 Hb_000880_040--Hb_170023_010 Hb_002851_070 Hb_002851_070 Hb_000880_040--Hb_002851_070 Hb_004709_030--Hb_000365_440 Hb_019278_010 Hb_019278_010 Hb_004709_030--Hb_019278_010 Hb_000087_120 Hb_000087_120 Hb_004709_030--Hb_000087_120 Hb_026419_010 Hb_026419_010 Hb_004709_030--Hb_026419_010 Hb_004709_030--Hb_170023_010 Hb_001285_020 Hb_001285_020 Hb_009102_010--Hb_001285_020 Hb_009102_010--Hb_000260_750 Hb_000500_360 Hb_000500_360 Hb_009102_010--Hb_000500_360 Hb_009102_010--Hb_000880_040 Hb_002025_290 Hb_002025_290 Hb_009102_010--Hb_002025_290 Hb_078582_010 Hb_078582_010 Hb_009102_010--Hb_078582_010 Hb_000336_280--Hb_001832_110 Hb_002685_100 Hb_002685_100 Hb_000336_280--Hb_002685_100 Hb_000336_280--Hb_005333_210 Hb_002304_190 Hb_002304_190 Hb_000336_280--Hb_002304_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 6.68694 42.1229 13.1732 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.169831 0.0267211 0 37.669 27.9179

CAGE analysis