Hb_001188_030

Information

Type -
Description -
Location Contig1188: 48357-51916
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa010642mg
description hypothetical protein
nr
ID XP_012064864.1
description PREDICTED: proteasome subunit beta type-4-like [Jatropha curcas]
swissprot
ID Q7DLR9
description Proteasome subunit beta type-4 OS=Arabidopsis thaliana GN=PBG1 PE=1 SV=2
trembl
ID A0A067LIM3
description Proteasome subunit beta type OS=Jatropha curcas GN=JCGZ_05566 PE=3 SV=1
Gene Ontology
ID GO:0005839
description proteasome subunit beta type-4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05556: 48467-51885
cDNA
(Sanger)
(ID:Location)		 020_O10.ab1: 48532-51639 , 022_A08.ab1: 48503-51561 , 050_B24.ab1: 48504-50761

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001188_030 0.0 - - PREDICTED: proteasome subunit beta type-4-like [Jatropha curcas]
2 Hb_001718_030 0.0401760486 - - PREDICTED: calcineurin B-like protein 9 isoform X1 [Jatropha curcas]
3 Hb_000676_390 0.0592520013 - - PREDICTED: protein FMP32, mitochondrial [Jatropha curcas]
4 Hb_001431_080 0.0691980796 - - 40S ribosomal protein S11, putative [Ricinus communis]
5 Hb_006355_040 0.0724140504 - - PREDICTED: chaperonin CPN60-2, mitochondrial-like [Jatropha curcas]
6 Hb_015299_030 0.0748240254 - - PREDICTED: proteasome subunit alpha type-7 [Jatropha curcas]
7 Hb_001931_010 0.0799699849 - - PREDICTED: NADH--cytochrome b5 reductase 1-like [Jatropha curcas]
8 Hb_002060_010 0.0839413419 - - PREDICTED: uncharacterized protein LOC105642435 isoform X1 [Jatropha curcas]
9 Hb_006326_040 0.0850832093 - - conserved hypothetical protein [Ricinus communis]
10 Hb_005843_140 0.0884992048 - - Red chlorophyll catabolite reductase, chloroplast precursor, putative [Ricinus communis]
11 Hb_008071_020 0.0889894622 - - PREDICTED: serine/threonine-protein kinase AFC1 [Jatropha curcas]
12 Hb_000676_310 0.0895810708 - - BnaC09g40680D [Brassica napus]
13 Hb_002028_090 0.0909662218 - - PREDICTED: E3 ubiquitin-protein ligase AIP2-like [Jatropha curcas]
14 Hb_002811_170 0.0920805222 - - PREDICTED: 40S ribosomal protein S3a-1 [Jatropha curcas]
15 Hb_002968_040 0.0929396123 - - PREDICTED: 26S protease regulatory subunit 7-like [Jatropha curcas]
16 Hb_006198_070 0.0935232393 - - pantoate-beta-alanine ligase, putative [Ricinus communis]
17 Hb_003582_070 0.0937578207 - - conserved hypothetical protein [Ricinus communis]
18 Hb_004057_010 0.0943540515 - - PREDICTED: uncharacterized protein LOC105649313 [Jatropha curcas]
19 Hb_000505_130 0.0989504776 - - PREDICTED: uncharacterized protein LOC105641262 isoform X1 [Jatropha curcas]
20 Hb_024074_010 0.099632182 - - PREDICTED: cytochrome c [Jatropha curcas]

Gene co-expression network

sample Hb_001188_030 Hb_001188_030 Hb_001718_030 Hb_001718_030 Hb_001188_030--Hb_001718_030 Hb_000676_390 Hb_000676_390 Hb_001188_030--Hb_000676_390 Hb_001431_080 Hb_001431_080 Hb_001188_030--Hb_001431_080 Hb_006355_040 Hb_006355_040 Hb_001188_030--Hb_006355_040 Hb_015299_030 Hb_015299_030 Hb_001188_030--Hb_015299_030 Hb_001931_010 Hb_001931_010 Hb_001188_030--Hb_001931_010 Hb_001718_030--Hb_006355_040 Hb_002060_010 Hb_002060_010 Hb_001718_030--Hb_002060_010 Hb_001718_030--Hb_001431_080 Hb_001718_030--Hb_000676_390 Hb_006326_040 Hb_006326_040 Hb_001718_030--Hb_006326_040 Hb_008071_020 Hb_008071_020 Hb_000676_390--Hb_008071_020 Hb_004889_020 Hb_004889_020 Hb_000676_390--Hb_004889_020 Hb_026889_030 Hb_026889_030 Hb_000676_390--Hb_026889_030 Hb_000676_390--Hb_001931_010 Hb_002540_080 Hb_002540_080 Hb_000676_390--Hb_002540_080 Hb_001431_080--Hb_015299_030 Hb_132840_140 Hb_132840_140 Hb_001431_080--Hb_132840_140 Hb_000676_310 Hb_000676_310 Hb_001431_080--Hb_000676_310 Hb_001431_080--Hb_000676_390 Hb_005843_140 Hb_005843_140 Hb_006355_040--Hb_005843_140 Hb_002968_040 Hb_002968_040 Hb_006355_040--Hb_002968_040 Hb_003669_020 Hb_003669_020 Hb_006355_040--Hb_003669_020 Hb_006198_070 Hb_006198_070 Hb_006355_040--Hb_006198_070 Hb_002811_170 Hb_002811_170 Hb_015299_030--Hb_002811_170 Hb_000946_090 Hb_000946_090 Hb_015299_030--Hb_000946_090 Hb_015299_030--Hb_001931_010 Hb_098315_020 Hb_098315_020 Hb_015299_030--Hb_098315_020 Hb_001931_010--Hb_008071_020 Hb_001931_010--Hb_006326_040 Hb_001341_150 Hb_001341_150 Hb_001931_010--Hb_001341_150 Hb_000505_130 Hb_000505_130 Hb_001931_010--Hb_000505_130 Hb_000566_120 Hb_000566_120 Hb_001931_010--Hb_000566_120 Hb_001279_080 Hb_001279_080 Hb_001931_010--Hb_001279_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
47.0501 48.2136 118.609 98.1094 41.4328 41.696
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
74.9296 218.073 98.3152 52.5566 57.727

CAGE analysis