Hb_001188_120

Information

Type -
Description -
Location Contig1188: 115902-118085
Sequence    

Annotation

kegg
ID vvi:100258617
description uncharacterized LOC100258617
nr
ID KDP44108.1
description hypothetical protein JCGZ_05575 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LA50
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05575 PE=4 SV=1
Gene Ontology
ID GO:0003746
description rnaligase isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001188_120 0.0 - - hypothetical protein JCGZ_05575 [Jatropha curcas]
2 Hb_012753_010 0.2262973821 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
3 Hb_003186_040 0.2323879902 - - PREDICTED: protein DENND6A [Jatropha curcas]
4 Hb_002791_020 0.2332456839 - - hypothetical protein AALP_AA5G271700 [Arabis alpina]
5 Hb_085083_020 0.2332488196 - - PREDICTED: receptor-like protein kinase THESEUS 1 [Jatropha curcas]
6 Hb_076795_010 0.2344860036 - - hypothetical protein POPTR_0001s07680g, partial [Populus trichocarpa]
7 Hb_185058_020 0.2456546073 desease resistance Gene Name: NB-ARC PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647845 [Jatropha curcas]
8 Hb_012098_190 0.2465654937 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
9 Hb_002047_020 0.2480318222 - - 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative [Ricinus communis]
10 Hb_001085_210 0.250374684 - - PREDICTED: myosin-binding protein 3 [Jatropha curcas]
11 Hb_000144_040 0.2525308417 - - hypothetical protein POPTR_0006s06790g [Populus trichocarpa]
12 Hb_000964_070 0.2549665528 - - PREDICTED: ATP synthase subunit O, mitochondrial [Jatropha curcas]
13 Hb_001341_020 0.2592645254 - - Uncharacterised protein [Bordetella pertussis]
14 Hb_015978_050 0.2599124459 - - -
15 Hb_005396_060 0.2625482285 - - -
16 Hb_007054_050 0.2718266761 - - -
17 Hb_005511_090 0.2735152938 - - PREDICTED: probable ubiquitin-conjugating enzyme E2 C isoform X1 [Jatropha curcas]
18 Hb_002226_050 0.2752559429 - - PREDICTED: uncharacterized protein LOC105641366 isoform X1 [Jatropha curcas]
19 Hb_032496_010 0.2755071929 - - hypothetical protein POPTR_0012s10850g [Populus trichocarpa]
20 Hb_012092_080 0.2755107971 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15280-like [Malus domestica]

Gene co-expression network

sample Hb_001188_120 Hb_001188_120 Hb_012753_010 Hb_012753_010 Hb_001188_120--Hb_012753_010 Hb_003186_040 Hb_003186_040 Hb_001188_120--Hb_003186_040 Hb_002791_020 Hb_002791_020 Hb_001188_120--Hb_002791_020 Hb_085083_020 Hb_085083_020 Hb_001188_120--Hb_085083_020 Hb_076795_010 Hb_076795_010 Hb_001188_120--Hb_076795_010 Hb_185058_020 Hb_185058_020 Hb_001188_120--Hb_185058_020 Hb_000054_110 Hb_000054_110 Hb_012753_010--Hb_000054_110 Hb_005511_090 Hb_005511_090 Hb_012753_010--Hb_005511_090 Hb_012753_010--Hb_185058_020 Hb_005731_150 Hb_005731_150 Hb_012753_010--Hb_005731_150 Hb_021854_020 Hb_021854_020 Hb_012753_010--Hb_021854_020 Hb_000022_140 Hb_000022_140 Hb_003186_040--Hb_000022_140 Hb_001085_210 Hb_001085_210 Hb_003186_040--Hb_001085_210 Hb_008803_040 Hb_008803_040 Hb_003186_040--Hb_008803_040 Hb_000058_080 Hb_000058_080 Hb_003186_040--Hb_000058_080 Hb_002811_190 Hb_002811_190 Hb_003186_040--Hb_002811_190 Hb_002226_050 Hb_002226_050 Hb_003186_040--Hb_002226_050 Hb_002791_020--Hb_008803_040 Hb_043708_010 Hb_043708_010 Hb_002791_020--Hb_043708_010 Hb_170156_010 Hb_170156_010 Hb_002791_020--Hb_170156_010 Hb_006569_050 Hb_006569_050 Hb_002791_020--Hb_006569_050 Hb_004650_060 Hb_004650_060 Hb_002791_020--Hb_004650_060 Hb_003175_110 Hb_003175_110 Hb_085083_020--Hb_003175_110 Hb_000964_070 Hb_000964_070 Hb_085083_020--Hb_000964_070 Hb_066487_010 Hb_066487_010 Hb_085083_020--Hb_066487_010 Hb_063943_010 Hb_063943_010 Hb_085083_020--Hb_063943_010 Hb_005523_010 Hb_005523_010 Hb_085083_020--Hb_005523_010 Hb_090530_010 Hb_090530_010 Hb_085083_020--Hb_090530_010 Hb_000031_350 Hb_000031_350 Hb_076795_010--Hb_000031_350 Hb_012098_190 Hb_012098_190 Hb_076795_010--Hb_012098_190 Hb_000144_040 Hb_000144_040 Hb_076795_010--Hb_000144_040 Hb_172388_010 Hb_172388_010 Hb_076795_010--Hb_172388_010 Hb_008730_010 Hb_008730_010 Hb_076795_010--Hb_008730_010 Hb_009848_050 Hb_009848_050 Hb_185058_020--Hb_009848_050 Hb_185058_020--Hb_001085_210 Hb_007037_010 Hb_007037_010 Hb_185058_020--Hb_007037_010 Hb_041813_050 Hb_041813_050 Hb_185058_020--Hb_041813_050 Hb_009848_060 Hb_009848_060 Hb_185058_020--Hb_009848_060 Hb_069147_010 Hb_069147_010 Hb_185058_020--Hb_069147_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.173456 0.285708 0.30258 0.0385343 0.247548 0.0407527
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0529858 0.0833435 1.22429 1.20766 2.04064

CAGE analysis