Hb_001189_050

Information

Type -
Description -
Location Contig1189: 40241-42724
Sequence    

Annotation

kegg
ID rcu:RCOM_1341460
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012083069.1
description PREDICTED: pentatricopeptide repeat-containing protein At4g01570 [Jatropha curcas]
swissprot
ID Q8VZE4
description Pentatricopeptide repeat-containing protein At4g01570 OS=Arabidopsis thaliana GN=At4g01570 PE=2 SV=1
trembl
ID A0A067K7Y7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14156 PE=4 SV=1
Gene Ontology
ID GO:0005515
description pentatricopeptide repeat-containing protein at4g01570

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001189_050 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At4g01570 [Jatropha curcas]
2 Hb_011030_020 0.0793248264 - - PREDICTED: pentatricopeptide repeat-containing protein At2g21090 [Jatropha curcas]
3 Hb_000019_060 0.0997808865 - - PREDICTED: pentatricopeptide repeat-containing protein At3g26782, mitochondrial [Jatropha curcas]
4 Hb_001493_180 0.1062027226 - - fyve finger-containing phosphoinositide kinase, fyv1, putative [Ricinus communis]
5 Hb_010608_050 0.1069801201 - - PREDICTED: uncharacterized protein LOC105645728 [Jatropha curcas]
6 Hb_025557_030 0.1119809509 - - PREDICTED: pentatricopeptide repeat-containing protein At1g74600, chloroplastic [Jatropha curcas]
7 Hb_001357_010 0.112357625 - - -
8 Hb_000002_050 0.1148557835 - - PREDICTED: pentatricopeptide repeat-containing protein At4g33990 [Jatropha curcas]
9 Hb_012799_100 0.1186880663 - - PREDICTED: pentatricopeptide repeat-containing protein At3g29230-like [Jatropha curcas]
10 Hb_004846_070 0.1194101202 - - PREDICTED: pentatricopeptide repeat-containing protein At3g14730 [Populus euphratica]
11 Hb_000172_560 0.1213768802 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750 [Jatropha curcas]
12 Hb_002205_130 0.1226282052 - - hypothetical protein B456_008G176100 [Gossypium raimondii]
13 Hb_013607_040 0.1240177352 - - PREDICTED: pentatricopeptide repeat-containing protein At4g18520-like [Jatropha curcas]
14 Hb_001090_050 0.1244533822 - - PREDICTED: mediator of RNA polymerase II transcription subunit 1 isoform X1 [Jatropha curcas]
15 Hb_005162_070 0.1254234029 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001373_180 0.1267969294 - - PREDICTED: uncharacterized protein LOC105628780 isoform X2 [Jatropha curcas]
17 Hb_007075_050 0.1277563843 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
18 Hb_000236_140 0.1284827446 - - PREDICTED: splicing regulatory glutamine/lysine-rich protein 1-like [Jatropha curcas]
19 Hb_002307_170 0.130675885 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Jatropha curcas]
20 Hb_000366_090 0.1320148962 - - PREDICTED: pentatricopeptide repeat-containing protein At4g32430, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_001189_050 Hb_001189_050 Hb_011030_020 Hb_011030_020 Hb_001189_050--Hb_011030_020 Hb_000019_060 Hb_000019_060 Hb_001189_050--Hb_000019_060 Hb_001493_180 Hb_001493_180 Hb_001189_050--Hb_001493_180 Hb_010608_050 Hb_010608_050 Hb_001189_050--Hb_010608_050 Hb_025557_030 Hb_025557_030 Hb_001189_050--Hb_025557_030 Hb_001357_010 Hb_001357_010 Hb_001189_050--Hb_001357_010 Hb_005162_070 Hb_005162_070 Hb_011030_020--Hb_005162_070 Hb_011030_020--Hb_010608_050 Hb_002205_130 Hb_002205_130 Hb_011030_020--Hb_002205_130 Hb_008695_100 Hb_008695_100 Hb_011030_020--Hb_008695_100 Hb_000617_150 Hb_000617_150 Hb_011030_020--Hb_000617_150 Hb_168319_030 Hb_168319_030 Hb_000019_060--Hb_168319_030 Hb_007075_050 Hb_007075_050 Hb_000019_060--Hb_007075_050 Hb_000366_090 Hb_000366_090 Hb_000019_060--Hb_000366_090 Hb_019654_090 Hb_019654_090 Hb_000019_060--Hb_019654_090 Hb_004128_180 Hb_004128_180 Hb_000019_060--Hb_004128_180 Hb_000019_060--Hb_011030_020 Hb_001090_050 Hb_001090_050 Hb_001493_180--Hb_001090_050 Hb_000260_570 Hb_000260_570 Hb_001493_180--Hb_000260_570 Hb_001493_180--Hb_005162_070 Hb_001817_020 Hb_001817_020 Hb_001493_180--Hb_001817_020 Hb_001493_180--Hb_011030_020 Hb_010608_050--Hb_008695_100 Hb_004607_030 Hb_004607_030 Hb_010608_050--Hb_004607_030 Hb_010608_050--Hb_000617_150 Hb_001699_130 Hb_001699_130 Hb_010608_050--Hb_001699_130 Hb_011534_030 Hb_011534_030 Hb_010608_050--Hb_011534_030 Hb_000318_330 Hb_000318_330 Hb_025557_030--Hb_000318_330 Hb_025557_030--Hb_004607_030 Hb_027472_170 Hb_027472_170 Hb_025557_030--Hb_027472_170 Hb_000019_130 Hb_000019_130 Hb_025557_030--Hb_000019_130 Hb_004375_150 Hb_004375_150 Hb_025557_030--Hb_004375_150 Hb_025557_030--Hb_011030_020 Hb_001294_010 Hb_001294_010 Hb_001357_010--Hb_001294_010 Hb_092107_010 Hb_092107_010 Hb_001357_010--Hb_092107_010 Hb_001357_010--Hb_011030_020 Hb_001357_010--Hb_005162_070 Hb_029510_040 Hb_029510_040 Hb_001357_010--Hb_029510_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.878057 1.06006 0.255007 0.46271 0.607894 1.25946
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.13869 2.42205 4.77683 1.04525 1.24971

CAGE analysis