Hb_001189_110

Information

Type -
Description -
Location Contig1189: 78094-81213
Sequence    

Annotation

kegg
ID rcu:RCOM_1341390
description hypothetical protein
nr
ID AGL39722.1
description NAC transcription factor 066 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID R4N5R9
description NAC transcription factor 066 OS=Jatropha curcas PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05597: 79001-79785
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001189_110 0.0 - - NAC transcription factor 066 [Jatropha curcas]
2 Hb_003442_100 0.13796607 - - PREDICTED: uncharacterized protein LOC105650128 [Jatropha curcas]
3 Hb_006643_020 0.160844339 - - PREDICTED: uncharacterized protein LOC105628407 [Jatropha curcas]
4 Hb_000426_030 0.1721067303 - - PREDICTED: protein STICHEL-like 3 isoform X2 [Jatropha curcas]
5 Hb_000975_350 0.1734956648 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
6 Hb_000302_260 0.1756108315 - - hypothetical protein [Bruguiera gymnorhiza]
7 Hb_002042_130 0.179578634 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-3 [Jatropha curcas]
8 Hb_004631_210 0.1807154027 - - hypothetical protein POPTR_0007s05070g [Populus trichocarpa]
9 Hb_001049_020 0.1809363279 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000429_180 0.1822561505 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
11 Hb_001726_110 0.1822903118 transcription factor TF Family: Orphans PREDICTED: B-box zinc finger protein 19 [Jatropha curcas]
12 Hb_005146_080 0.1840523608 - - PREDICTED: uncharacterized protein LOC105636704 isoform X2 [Jatropha curcas]
13 Hb_005779_030 0.1842914951 - - PREDICTED: nuclear pore complex protein NUP62 [Jatropha curcas]
14 Hb_000126_110 0.1850215771 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase RFK1 isoform X3 [Populus euphratica]
15 Hb_006060_020 0.1851165533 transcription factor TF Family: Tify PREDICTED: protein TIFY 8 isoform X3 [Jatropha curcas]
16 Hb_000625_090 0.1870923815 - - conserved hypothetical protein [Ricinus communis]
17 Hb_006446_010 0.1882967711 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
18 Hb_172632_050 0.1916084937 - - PREDICTED: uncharacterized protein LOC105646134 [Jatropha curcas]
19 Hb_007811_050 0.1941518724 - - PREDICTED: probable serine/threonine-protein kinase NAK [Jatropha curcas]
20 Hb_000215_320 0.194178248 - - phosphofructokinase [Hevea brasiliensis]

Gene co-expression network

sample Hb_001189_110 Hb_001189_110 Hb_003442_100 Hb_003442_100 Hb_001189_110--Hb_003442_100 Hb_006643_020 Hb_006643_020 Hb_001189_110--Hb_006643_020 Hb_000426_030 Hb_000426_030 Hb_001189_110--Hb_000426_030 Hb_000975_350 Hb_000975_350 Hb_001189_110--Hb_000975_350 Hb_000302_260 Hb_000302_260 Hb_001189_110--Hb_000302_260 Hb_002042_130 Hb_002042_130 Hb_001189_110--Hb_002042_130 Hb_006446_010 Hb_006446_010 Hb_003442_100--Hb_006446_010 Hb_004899_310 Hb_004899_310 Hb_003442_100--Hb_004899_310 Hb_001103_020 Hb_001103_020 Hb_003442_100--Hb_001103_020 Hb_005779_030 Hb_005779_030 Hb_003442_100--Hb_005779_030 Hb_012317_020 Hb_012317_020 Hb_003442_100--Hb_012317_020 Hb_006060_020 Hb_006060_020 Hb_006643_020--Hb_006060_020 Hb_001396_110 Hb_001396_110 Hb_006643_020--Hb_001396_110 Hb_000215_320 Hb_000215_320 Hb_006643_020--Hb_000215_320 Hb_001911_040 Hb_001911_040 Hb_006643_020--Hb_001911_040 Hb_085972_010 Hb_085972_010 Hb_006643_020--Hb_085972_010 Hb_011360_050 Hb_011360_050 Hb_006643_020--Hb_011360_050 Hb_000503_010 Hb_000503_010 Hb_000426_030--Hb_000503_010 Hb_002639_100 Hb_002639_100 Hb_000426_030--Hb_002639_100 Hb_062416_010 Hb_062416_010 Hb_000426_030--Hb_062416_010 Hb_000270_350 Hb_000270_350 Hb_000426_030--Hb_000270_350 Hb_000676_040 Hb_000676_040 Hb_000426_030--Hb_000676_040 Hb_000975_350--Hb_000215_320 Hb_004108_220 Hb_004108_220 Hb_000975_350--Hb_004108_220 Hb_000359_090 Hb_000359_090 Hb_000975_350--Hb_000359_090 Hb_000975_350--Hb_006060_020 Hb_000749_050 Hb_000749_050 Hb_000975_350--Hb_000749_050 Hb_009898_040 Hb_009898_040 Hb_000975_350--Hb_009898_040 Hb_000302_260--Hb_002042_130 Hb_000402_210 Hb_000402_210 Hb_000302_260--Hb_000402_210 Hb_028487_020 Hb_028487_020 Hb_000302_260--Hb_028487_020 Hb_189208_020 Hb_189208_020 Hb_000302_260--Hb_189208_020 Hb_000086_340 Hb_000086_340 Hb_000302_260--Hb_000086_340 Hb_088753_010 Hb_088753_010 Hb_000302_260--Hb_088753_010 Hb_000538_230 Hb_000538_230 Hb_002042_130--Hb_000538_230 Hb_034688_020 Hb_034688_020 Hb_002042_130--Hb_034688_020 Hb_000649_110 Hb_000649_110 Hb_002042_130--Hb_000649_110 Hb_001159_110 Hb_001159_110 Hb_002042_130--Hb_001159_110 Hb_005074_030 Hb_005074_030 Hb_002042_130--Hb_005074_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.562733 2.27721 0.726265 2.00571 0.0934911 0.787069
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.28055 0.955468 0.856972 1.76899 0.110204

CAGE analysis