Hb_001189_160

Information

Type -
Description -
Location Contig1189: 133156-134490
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05606: 134237-136287
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001189_160 0.0 - - -
2 Hb_001743_080 0.0133666538 - - -
3 Hb_003850_030 0.0224685042 - - hypothetical protein PRUPE_ppa016115mg [Prunus persica]
4 Hb_132330_010 0.0369158321 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000349_130 0.0474065202 - - hypothetical protein JCGZ_06349 [Jatropha curcas]
6 Hb_001240_030 0.0589310478 - - PREDICTED: uncharacterized protein LOC105634453 [Jatropha curcas]
7 Hb_002326_160 0.0592997551 - - hypothetical protein JCGZ_04332 [Jatropha curcas]
8 Hb_150093_010 0.0594740213 - - putative polyprotein [Oryza sativa Japonica Group]
9 Hb_188247_020 0.0597001424 - - hypothetical protein, partial [Cecembia lonarensis]
10 Hb_000518_010 0.0599150279 transcription factor TF Family: MYB hypothetical protein POPTR_0010s17300g [Populus trichocarpa]
11 Hb_001900_040 0.0600374097 - - PREDICTED: uncharacterized protein LOC105049010 [Elaeis guineensis]
12 Hb_003294_080 0.0614517718 - - -
13 Hb_163720_010 0.0616142686 - - PREDICTED: uncharacterized protein LOC105636883 [Jatropha curcas]
14 Hb_073174_010 0.0623443599 - - PREDICTED: MLP-like protein 328 [Jatropha curcas]
15 Hb_000329_240 0.0625814918 transcription factor TF Family: PLATZ zinc ion binding protein, putative [Ricinus communis]
16 Hb_011444_050 0.0630957277 - - hypothetical protein POPTR_0001s08730g [Populus trichocarpa]
17 Hb_185532_010 0.0658670085 - - hypothetical protein POPTR_0006s25570g [Populus trichocarpa]
18 Hb_000696_180 0.0660933152 - - cysteine protease, putative [Ricinus communis]
19 Hb_159542_010 0.0675408002 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like [Jatropha curcas]
20 Hb_073973_040 0.0698542872 - - PREDICTED: uncharacterized protein LOC103941330 [Pyrus x bretschneideri]

Gene co-expression network

sample Hb_001189_160 Hb_001189_160 Hb_001743_080 Hb_001743_080 Hb_001189_160--Hb_001743_080 Hb_003850_030 Hb_003850_030 Hb_001189_160--Hb_003850_030 Hb_132330_010 Hb_132330_010 Hb_001189_160--Hb_132330_010 Hb_000349_130 Hb_000349_130 Hb_001189_160--Hb_000349_130 Hb_001240_030 Hb_001240_030 Hb_001189_160--Hb_001240_030 Hb_002326_160 Hb_002326_160 Hb_001189_160--Hb_002326_160 Hb_001743_080--Hb_003850_030 Hb_001743_080--Hb_132330_010 Hb_003294_080 Hb_003294_080 Hb_001743_080--Hb_003294_080 Hb_185532_010 Hb_185532_010 Hb_001743_080--Hb_185532_010 Hb_073973_040 Hb_073973_040 Hb_001743_080--Hb_073973_040 Hb_003850_030--Hb_132330_010 Hb_003850_030--Hb_003294_080 Hb_003850_030--Hb_185532_010 Hb_003850_030--Hb_073973_040 Hb_132330_010--Hb_003294_080 Hb_132330_010--Hb_185532_010 Hb_132330_010--Hb_073973_040 Hb_000123_130 Hb_000123_130 Hb_132330_010--Hb_000123_130 Hb_000349_130--Hb_001240_030 Hb_000349_130--Hb_002326_160 Hb_150093_010 Hb_150093_010 Hb_000349_130--Hb_150093_010 Hb_188247_020 Hb_188247_020 Hb_000349_130--Hb_188247_020 Hb_000518_010 Hb_000518_010 Hb_000349_130--Hb_000518_010 Hb_001900_040 Hb_001900_040 Hb_000349_130--Hb_001900_040 Hb_001240_030--Hb_002326_160 Hb_001240_030--Hb_150093_010 Hb_001240_030--Hb_188247_020 Hb_001240_030--Hb_000518_010 Hb_001240_030--Hb_001900_040 Hb_163720_010 Hb_163720_010 Hb_001240_030--Hb_163720_010 Hb_002326_160--Hb_150093_010 Hb_002326_160--Hb_188247_020 Hb_002326_160--Hb_000518_010 Hb_002326_160--Hb_001900_040 Hb_002326_160--Hb_163720_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.426268 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.292706 0

CAGE analysis