Hb_001190_020

Information

Type -
Description -
Location Contig1190: 27389-29790
Sequence    

Annotation

kegg
ID rcu:RCOM_1577280
description ankyrin repeat-containing protein, putative
nr
ID XP_002513462.1
description ankyrin repeat-containing protein, putative [Ricinus communis]
swissprot
ID Q9C7A2
description Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1
trembl
ID B9RI93
description Ankyrin repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1577280 PE=4 SV=1
Gene Ontology
ID GO:0005515
description ankyrin-2-like isoform x4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05615: 28218-28466 , PASA_asmbl_05616: 29327-29518
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001190_020 0.0 - - ankyrin repeat-containing protein, putative [Ricinus communis]
2 Hb_006519_010 0.0577123187 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At4g27220 [Vitis vinifera]
3 Hb_000959_290 0.0676525196 - - PREDICTED: uncharacterized protein LOC105636589 [Jatropha curcas]
4 Hb_010368_040 0.0874728507 - - conserved hypothetical protein [Ricinus communis]
5 Hb_027913_010 0.0897624093 - - ankyrin repeat-containing protein, putative [Ricinus communis]
6 Hb_004059_010 0.0934510604 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
7 Hb_004994_070 0.0978020752 - - PREDICTED: BON1-associated protein 2 [Jatropha curcas]
8 Hb_004656_030 0.1028846159 - - putative pectin methylesterase family protein [Populus trichocarpa]
9 Hb_078477_010 0.1034407831 - - LRR receptor-like serine/threonine-protein kinase, putative [Theobroma cacao]
10 Hb_002572_060 0.1088958854 - - conserved hypothetical protein [Ricinus communis]
11 Hb_004767_040 0.112035315 - - Lysosomal Pro-X carboxypeptidase, putative [Ricinus communis]
12 Hb_022630_010 0.1139236494 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
13 Hb_000336_160 0.1143785257 - - ATP binding protein, putative [Ricinus communis]
14 Hb_093204_010 0.1163839022 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000333_150 0.1202363588 - - hypothetical protein RCOM_0711500 [Ricinus communis]
16 Hb_000336_170 0.1229524079 - - Polcalcin Jun o, putative [Ricinus communis]
17 Hb_033153_010 0.1247697843 - - PREDICTED: MLO-like protein 12 [Jatropha curcas]
18 Hb_001437_200 0.1255596104 - - PREDICTED: UDP-glycosyltransferase 86A2 [Jatropha curcas]
19 Hb_005648_030 0.127703268 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH18-like [Jatropha curcas]
20 Hb_007371_010 0.1291035811 transcription factor TF Family: GRAS PREDICTED: protein SHORT-ROOT-like [Populus euphratica]

Gene co-expression network

sample Hb_001190_020 Hb_001190_020 Hb_006519_010 Hb_006519_010 Hb_001190_020--Hb_006519_010 Hb_000959_290 Hb_000959_290 Hb_001190_020--Hb_000959_290 Hb_010368_040 Hb_010368_040 Hb_001190_020--Hb_010368_040 Hb_027913_010 Hb_027913_010 Hb_001190_020--Hb_027913_010 Hb_004059_010 Hb_004059_010 Hb_001190_020--Hb_004059_010 Hb_004994_070 Hb_004994_070 Hb_001190_020--Hb_004994_070 Hb_006519_010--Hb_000959_290 Hb_006519_010--Hb_004994_070 Hb_093204_010 Hb_093204_010 Hb_006519_010--Hb_093204_010 Hb_004767_040 Hb_004767_040 Hb_006519_010--Hb_004767_040 Hb_002572_060 Hb_002572_060 Hb_006519_010--Hb_002572_060 Hb_000959_290--Hb_004994_070 Hb_000959_290--Hb_002572_060 Hb_000959_290--Hb_093204_010 Hb_000333_150 Hb_000333_150 Hb_000959_290--Hb_000333_150 Hb_010368_040--Hb_004059_010 Hb_010368_040--Hb_006519_010 Hb_039757_010 Hb_039757_010 Hb_010368_040--Hb_039757_010 Hb_001405_180 Hb_001405_180 Hb_010368_040--Hb_001405_180 Hb_009897_030 Hb_009897_030 Hb_010368_040--Hb_009897_030 Hb_004656_030 Hb_004656_030 Hb_027913_010--Hb_004656_030 Hb_022630_010 Hb_022630_010 Hb_027913_010--Hb_022630_010 Hb_000656_360 Hb_000656_360 Hb_027913_010--Hb_000656_360 Hb_001437_200 Hb_001437_200 Hb_027913_010--Hb_001437_200 Hb_078477_010 Hb_078477_010 Hb_027913_010--Hb_078477_010 Hb_000215_120 Hb_000215_120 Hb_004059_010--Hb_000215_120 Hb_001796_010 Hb_001796_010 Hb_004059_010--Hb_001796_010 Hb_000879_100 Hb_000879_100 Hb_004059_010--Hb_000879_100 Hb_004059_010--Hb_006519_010 Hb_004994_070--Hb_093204_010 Hb_004994_070--Hb_000333_150 Hb_011111_010 Hb_011111_010 Hb_004994_070--Hb_011111_010 Hb_004994_070--Hb_002572_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00983808 59.6562 0.743553 4.4884 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0333668 1.36464 0.148747

CAGE analysis