Hb_001190_060

Information

Type transcription factor
Description TF Family: GRAS
Location Contig1190: 72667-74334
Sequence    

Annotation

kegg
ID rcu:RCOM_0652460
description Nodulation signaling pathway 1 protein, putative
nr
ID XP_012069237.1
description PREDICTED: nodulation-signaling pathway 1 protein [Jatropha curcas]
swissprot
ID Q4VYC8
description Nodulation-signaling pathway 1 protein OS=Medicago truncatula GN=NSP1 PE=1 SV=1
trembl
ID A0A067L8A6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24699 PE=4 SV=1
Gene Ontology
ID GO:0003700
description nodulation-signaling pathway 1 protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001190_060 0.0 transcription factor TF Family: GRAS PREDICTED: nodulation-signaling pathway 1 protein [Jatropha curcas]
2 Hb_003096_050 0.1235062506 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000816_120 0.1455422337 - - PREDICTED: uncharacterized protein LOC105649214 [Jatropha curcas]
4 Hb_000056_330 0.1804788733 - - unnamed protein product [Vitis vinifera]
5 Hb_003992_250 0.1859571857 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 2-like [Glycine max]
6 Hb_000140_160 0.1918086574 - - PREDICTED: neurofilament light polypeptide-like [Gossypium raimondii]
7 Hb_002311_240 0.1960762252 - - hypothetical protein JCGZ_18937 [Jatropha curcas]
8 Hb_007894_250 0.1962276743 - - hypothetical protein JCGZ_06575 [Jatropha curcas]
9 Hb_000213_130 0.2011934234 transcription factor TF Family: HSF Heat Stress Transcription Factor family protein [Populus trichocarpa]
10 Hb_000019_220 0.2041377541 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF113-like [Jatropha curcas]
11 Hb_000926_130 0.2047785199 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
12 Hb_000007_110 0.2054957744 - - PREDICTED: peroxidase 11 [Jatropha curcas]
13 Hb_000500_110 0.2099198903 - - Blue copper protein precursor, putative [Ricinus communis]
14 Hb_010647_010 0.2126785188 - - PREDICTED: protein NP24-like [Eucalyptus grandis]
15 Hb_000975_150 0.2228699528 - - PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH8 isoform X1 [Jatropha curcas]
16 Hb_002918_230 0.2261263682 - - PREDICTED: probable glutathione S-transferase [Gossypium raimondii]
17 Hb_007520_040 0.2290458364 - - PREDICTED: carbonic anhydrase 2-like [Jatropha curcas]
18 Hb_003538_020 0.2302373977 - - (S)-N-methylcoclaurine 3'-hydroxylase isozyme, putative [Ricinus communis]
19 Hb_027445_090 0.238135399 - - oleosin 18.2 kDa-like [Jatropha curcas]
20 Hb_003057_080 0.2385816923 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_001190_060 Hb_001190_060 Hb_003096_050 Hb_003096_050 Hb_001190_060--Hb_003096_050 Hb_000816_120 Hb_000816_120 Hb_001190_060--Hb_000816_120 Hb_000056_330 Hb_000056_330 Hb_001190_060--Hb_000056_330 Hb_003992_250 Hb_003992_250 Hb_001190_060--Hb_003992_250 Hb_000140_160 Hb_000140_160 Hb_001190_060--Hb_000140_160 Hb_002311_240 Hb_002311_240 Hb_001190_060--Hb_002311_240 Hb_003096_050--Hb_000056_330 Hb_007894_250 Hb_007894_250 Hb_003096_050--Hb_007894_250 Hb_003096_050--Hb_000816_120 Hb_003096_050--Hb_002311_240 Hb_000975_150 Hb_000975_150 Hb_003096_050--Hb_000975_150 Hb_000758_040 Hb_000758_040 Hb_000816_120--Hb_000758_040 Hb_000816_120--Hb_000056_330 Hb_000213_130 Hb_000213_130 Hb_000816_120--Hb_000213_130 Hb_010647_010 Hb_010647_010 Hb_000816_120--Hb_010647_010 Hb_000926_130 Hb_000926_130 Hb_000056_330--Hb_000926_130 Hb_000056_330--Hb_007894_250 Hb_007072_020 Hb_007072_020 Hb_000056_330--Hb_007072_020 Hb_000056_330--Hb_000975_150 Hb_000039_070 Hb_000039_070 Hb_003992_250--Hb_000039_070 Hb_003538_020 Hb_003538_020 Hb_003992_250--Hb_003538_020 Hb_000976_070 Hb_000976_070 Hb_003992_250--Hb_000976_070 Hb_000412_030 Hb_000412_030 Hb_003992_250--Hb_000412_030 Hb_000390_260 Hb_000390_260 Hb_003992_250--Hb_000390_260 Hb_001045_050 Hb_001045_050 Hb_000140_160--Hb_001045_050 Hb_027445_090 Hb_027445_090 Hb_000140_160--Hb_027445_090 Hb_000256_100 Hb_000256_100 Hb_000140_160--Hb_000256_100 Hb_000500_110 Hb_000500_110 Hb_000140_160--Hb_000500_110 Hb_000007_110 Hb_000007_110 Hb_000140_160--Hb_000007_110 Hb_002311_240--Hb_010647_010 Hb_000019_220 Hb_000019_220 Hb_002311_240--Hb_000019_220 Hb_001250_140 Hb_001250_140 Hb_002311_240--Hb_001250_140 Hb_003057_080 Hb_003057_080 Hb_002311_240--Hb_003057_080 Hb_005000_310 Hb_005000_310 Hb_002311_240--Hb_005000_310 Hb_000347_550 Hb_000347_550 Hb_002311_240--Hb_000347_550
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.275832 0.490942 0.0381097 0.248766 0.0455245 0.0239453
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.27246 1.54523 0.246275 18.0535 0

CAGE analysis