Hb_001190_070

Information

Type -
Description -
Location Contig1190: 75120-85810
Sequence    

Annotation

kegg
ID rcu:RCOM_0652450
description ubiquitin-protein ligase, putative
nr
ID XP_012068880.1
description PREDICTED: mitochondrial ubiquitin ligase activator of nfkb 1-A [Jatropha curcas]
swissprot
ID Q969V5
description Mitochondrial ubiquitin ligase activator of NFKB 1 OS=Homo sapiens GN=MUL1 PE=1 SV=1
trembl
ID A0A067L9F3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24698 PE=4 SV=1
Gene Ontology
ID GO:0004842
description mitochondrial ubiquitin ligase activator of nfkb 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001190_070 0.0 - - PREDICTED: mitochondrial ubiquitin ligase activator of nfkb 1-A [Jatropha curcas]
2 Hb_000107_330 0.0884588546 - - PREDICTED: pentatricopeptide repeat-containing protein At4g38150 [Jatropha curcas]
3 Hb_120327_010 0.0893167887 - - PREDICTED: uncharacterized protein LOC105650959 [Jatropha curcas]
4 Hb_003525_010 0.0906149708 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 24-like isoform X1 [Populus euphratica]
5 Hb_044728_010 0.0907699614 - - -
6 Hb_007575_050 0.0913865018 transcription factor TF Family: BBR-BPC PREDICTED: protein BASIC PENTACYSTEINE6 [Jatropha curcas]
7 Hb_000011_230 0.0918910946 - - PREDICTED: bifunctional protein FolD 4, chloroplastic-like [Jatropha curcas]
8 Hb_004954_070 0.0946468002 - - PREDICTED: uncharacterized protein LOC105645187 [Jatropha curcas]
9 Hb_000085_050 0.0949887553 - - PREDICTED: grpE protein homolog, mitochondrial isoform X1 [Jatropha curcas]
10 Hb_004412_010 0.0966551776 - - -
11 Hb_004310_150 0.0976701642 - - PREDICTED: plasminogen activator inhibitor 1 RNA-binding protein [Vitis vinifera]
12 Hb_000317_240 0.0979906745 - - PREDICTED: protein DYAD [Jatropha curcas]
13 Hb_004410_030 0.0981608228 - - PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplastic isoform X1 [Jatropha curcas]
14 Hb_108350_010 0.0987304945 - - GTP-binding protein erg, putative [Ricinus communis]
15 Hb_000170_210 0.0988603687 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
16 Hb_002518_280 0.1006460314 - - phosphate transporter [Manihot esculenta]
17 Hb_000225_040 0.1006683467 - - PREDICTED: translation factor GUF1 homolog, mitochondrial [Nelumbo nucifera]
18 Hb_000092_170 0.1024710686 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14 [Jatropha curcas]
19 Hb_002271_030 0.1029483527 - - Vacuolar protein sorting protein, putative [Ricinus communis]
20 Hb_005194_010 0.1038717207 - - PREDICTED: casein kinase II subunit alpha [Jatropha curcas]

Gene co-expression network

sample Hb_001190_070 Hb_001190_070 Hb_000107_330 Hb_000107_330 Hb_001190_070--Hb_000107_330 Hb_120327_010 Hb_120327_010 Hb_001190_070--Hb_120327_010 Hb_003525_010 Hb_003525_010 Hb_001190_070--Hb_003525_010 Hb_044728_010 Hb_044728_010 Hb_001190_070--Hb_044728_010 Hb_007575_050 Hb_007575_050 Hb_001190_070--Hb_007575_050 Hb_000011_230 Hb_000011_230 Hb_001190_070--Hb_000011_230 Hb_000107_330--Hb_044728_010 Hb_000092_170 Hb_000092_170 Hb_000107_330--Hb_000092_170 Hb_009767_110 Hb_009767_110 Hb_000107_330--Hb_009767_110 Hb_000085_050 Hb_000085_050 Hb_000107_330--Hb_000085_050 Hb_000107_330--Hb_003525_010 Hb_000025_640 Hb_000025_640 Hb_000107_330--Hb_000025_640 Hb_000827_070 Hb_000827_070 Hb_120327_010--Hb_000827_070 Hb_007254_070 Hb_007254_070 Hb_120327_010--Hb_007254_070 Hb_120327_010--Hb_044728_010 Hb_004800_080 Hb_004800_080 Hb_120327_010--Hb_004800_080 Hb_000225_040 Hb_000225_040 Hb_120327_010--Hb_000225_040 Hb_120327_010--Hb_000107_330 Hb_003525_010--Hb_000092_170 Hb_000085_160 Hb_000085_160 Hb_003525_010--Hb_000085_160 Hb_000334_280 Hb_000334_280 Hb_003525_010--Hb_000334_280 Hb_003525_010--Hb_000225_040 Hb_003428_030 Hb_003428_030 Hb_003525_010--Hb_003428_030 Hb_000215_110 Hb_000215_110 Hb_003525_010--Hb_000215_110 Hb_044728_010--Hb_009767_110 Hb_044728_010--Hb_000092_170 Hb_044728_010--Hb_000225_040 Hb_001675_180 Hb_001675_180 Hb_044728_010--Hb_001675_180 Hb_010618_010 Hb_010618_010 Hb_044728_010--Hb_010618_010 Hb_003878_070 Hb_003878_070 Hb_007575_050--Hb_003878_070 Hb_007575_050--Hb_000225_040 Hb_004954_070 Hb_004954_070 Hb_007575_050--Hb_004954_070 Hb_003025_110 Hb_003025_110 Hb_007575_050--Hb_003025_110 Hb_002518_280 Hb_002518_280 Hb_007575_050--Hb_002518_280 Hb_004412_010 Hb_004412_010 Hb_007575_050--Hb_004412_010 Hb_000190_120 Hb_000190_120 Hb_000011_230--Hb_000190_120 Hb_009486_180 Hb_009486_180 Hb_000011_230--Hb_009486_180 Hb_000011_230--Hb_004954_070 Hb_009175_020 Hb_009175_020 Hb_000011_230--Hb_009175_020 Hb_000011_230--Hb_004412_010 Hb_000084_120 Hb_000084_120 Hb_000011_230--Hb_000084_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.18365 3.24919 2.62953 1.84928 6.12136 5.91145
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.40615 6.41224 4.09426 5.3943 3.6074

CAGE analysis