Hb_001191_060

Information

Type -
Description -
Location Contig1191: 84561-89469
Sequence    

Annotation

kegg
ID pop:POPTR_0014s05700g
description hypothetical protein
nr
ID XP_011033186.1
description PREDICTED: ankyrin repeat-containing protein At5g02620-like [Populus euphratica]
swissprot
ID Q9C7A2
description Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1
trembl
ID U5FSA5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s05700g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05642: 87994-88250 , PASA_asmbl_05643: 88841-89919
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001191_060 0.0 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Populus euphratica]
2 Hb_001310_020 0.0380501716 - - PREDICTED: cyclin-D5-1-like isoform X2 [Jatropha curcas]
3 Hb_001348_160 0.0451634972 - - Photosystem II 22 kDa protein, chloroplast precursor, putative [Ricinus communis]
4 Hb_001269_480 0.0499878369 - - PREDICTED: photosynthetic NDH subunit of subcomplex B 1, chloroplastic [Jatropha curcas]
5 Hb_000012_370 0.0533825644 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002818_130 0.0533917428 - - cytochrome P450, putative [Ricinus communis]
7 Hb_003033_020 0.0553735314 - - PREDICTED: glucomannan 4-beta-mannosyltransferase 9-like [Jatropha curcas]
8 Hb_003186_030 0.0563014837 transcription factor TF Family: MYB hypothetical protein POPTR_0012s05720g [Populus trichocarpa]
9 Hb_002809_030 0.0576204221 - - conserved hypothetical protein [Ricinus communis]
10 Hb_010697_020 0.0585445153 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000251_160 0.064483046 - - chlorophyll A/B binding protein, putative [Ricinus communis]
12 Hb_086022_020 0.0682850365 - - RecName: Full=Ribulose bisphosphate carboxylase small chain, chloroplastic; Short=RuBisCO small subunit; Flags: Precursor [Hevea brasiliensis]
13 Hb_000221_130 0.0693000214 - - thylakoid lumenal 29 kDa protein, chloroplastic [Jatropha curcas]
14 Hb_000320_370 0.0708363594 - - PREDICTED: ATP synthase gamma chain, chloroplastic [Jatropha curcas]
15 Hb_000307_100 0.0741250063 - - Plastocyanin A, chloroplast precursor, putative [Ricinus communis]
16 Hb_008748_050 0.0744244361 - - PREDICTED: chlorophyll a-b binding protein CP24 10A, chloroplastic-like [Populus euphratica]
17 Hb_005483_050 0.0758309571 - - conserved hypothetical protein [Ricinus communis]
18 Hb_004129_170 0.0761738944 - - PREDICTED: protein trichome birefringence-like 43 [Jatropha curcas]
19 Hb_011381_120 0.0769124306 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 2-like [Jatropha curcas]
20 Hb_176135_010 0.0774830088 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_001191_060 Hb_001191_060 Hb_001310_020 Hb_001310_020 Hb_001191_060--Hb_001310_020 Hb_001348_160 Hb_001348_160 Hb_001191_060--Hb_001348_160 Hb_001269_480 Hb_001269_480 Hb_001191_060--Hb_001269_480 Hb_000012_370 Hb_000012_370 Hb_001191_060--Hb_000012_370 Hb_002818_130 Hb_002818_130 Hb_001191_060--Hb_002818_130 Hb_003033_020 Hb_003033_020 Hb_001191_060--Hb_003033_020 Hb_001310_020--Hb_002818_130 Hb_001310_020--Hb_001269_480 Hb_011381_120 Hb_011381_120 Hb_001310_020--Hb_011381_120 Hb_001310_020--Hb_001348_160 Hb_000221_130 Hb_000221_130 Hb_001310_020--Hb_000221_130 Hb_010697_020 Hb_010697_020 Hb_001348_160--Hb_010697_020 Hb_002809_030 Hb_002809_030 Hb_001348_160--Hb_002809_030 Hb_001348_160--Hb_001269_480 Hb_031862_220 Hb_031862_220 Hb_001348_160--Hb_031862_220 Hb_000373_210 Hb_000373_210 Hb_001348_160--Hb_000373_210 Hb_001269_480--Hb_002818_130 Hb_001269_480--Hb_000221_130 Hb_086022_020 Hb_086022_020 Hb_001269_480--Hb_086022_020 Hb_176135_010 Hb_176135_010 Hb_000012_370--Hb_176135_010 Hb_008748_050 Hb_008748_050 Hb_000012_370--Hb_008748_050 Hb_000012_370--Hb_086022_020 Hb_000185_010 Hb_000185_010 Hb_000012_370--Hb_000185_010 Hb_000320_370 Hb_000320_370 Hb_000012_370--Hb_000320_370 Hb_002818_130--Hb_011381_120 Hb_002818_130--Hb_001348_160 Hb_002818_130--Hb_002809_030 Hb_006573_240 Hb_006573_240 Hb_003033_020--Hb_006573_240 Hb_003186_030 Hb_003186_030 Hb_003033_020--Hb_003186_030 Hb_003033_020--Hb_010697_020 Hb_003787_030 Hb_003787_030 Hb_003033_020--Hb_003787_030 Hb_000307_100 Hb_000307_100 Hb_003033_020--Hb_000307_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0629371 1.8162 1.07988 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0287873 5.63318

CAGE analysis