Hb_001191_090

Information

Type -
Description -
Location Contig1191: 102528-105075
Sequence    

Annotation

kegg
ID pop:POPTR_0002s06300g
description POPTRDRAFT_816194; hypothetical protein
nr
ID XP_012084508.1
description PREDICTED: uncharacterized protein LOC105643880 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JXG4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20148 PE=4 SV=1
Gene Ontology
ID GO:0005783
description wd repeat-containing protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05646: 103478-103620 , PASA_asmbl_05647: 102519-105028
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001191_090 0.0 - - PREDICTED: uncharacterized protein LOC105643880 [Jatropha curcas]
2 Hb_000173_220 0.0533809644 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein At5g19025 [Jatropha curcas]
3 Hb_003053_030 0.0540118676 - - PREDICTED: transport and Golgi organization 2 homolog [Jatropha curcas]
4 Hb_148200_010 0.05415546 - - hypothetical protein 33 [Hevea brasiliensis]
5 Hb_006573_220 0.0557644906 - - PREDICTED: trafficking protein particle complex subunit 1 [Jatropha curcas]
6 Hb_000181_300 0.0614034838 - - PREDICTED: uncharacterized protein LOC105650445 isoform X2 [Jatropha curcas]
7 Hb_003376_030 0.064529682 - - PREDICTED: ribonuclease P protein subunit p29 isoform X2 [Jatropha curcas]
8 Hb_002027_210 0.0654184718 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
9 Hb_001396_100 0.0684908845 - - DNA binding protein, putative [Ricinus communis]
10 Hb_003455_040 0.0708463627 - - hypothetical protein JCGZ_17270 [Jatropha curcas]
11 Hb_017948_010 0.0715591503 - - mitochondrial thioredoxin 2 [Hevea brasiliensis]
12 Hb_000364_030 0.0718401863 - - RNA binding protein, putative [Ricinus communis]
13 Hb_002631_020 0.0739803535 - - PREDICTED: protein FAM32A-like [Jatropha curcas]
14 Hb_000347_410 0.0747469873 - - PREDICTED: transcription initiation factor TFIID subunit 9 [Jatropha curcas]
15 Hb_004156_040 0.0752182871 - - PREDICTED: uncharacterized protein LOC105110611 [Populus euphratica]
16 Hb_002097_060 0.07671352 - - PREDICTED: 50S ribosomal protein L9, chloroplastic-like isoform X1 [Jatropha curcas]
17 Hb_008544_010 0.077611255 transcription factor TF Family: C2C2-LSD PREDICTED: protein LSD1 isoform X1 [Jatropha curcas]
18 Hb_002431_050 0.0778242879 - - PREDICTED: probable protein phosphatase 2C 11 [Jatropha curcas]
19 Hb_001461_010 0.0787600574 - - PREDICTED: trafficking protein particle complex subunit 5 [Pyrus x bretschneideri]
20 Hb_000012_100 0.0790828373 - - UPF0587 protein C1orf123 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_001191_090 Hb_001191_090 Hb_000173_220 Hb_000173_220 Hb_001191_090--Hb_000173_220 Hb_003053_030 Hb_003053_030 Hb_001191_090--Hb_003053_030 Hb_148200_010 Hb_148200_010 Hb_001191_090--Hb_148200_010 Hb_006573_220 Hb_006573_220 Hb_001191_090--Hb_006573_220 Hb_000181_300 Hb_000181_300 Hb_001191_090--Hb_000181_300 Hb_003376_030 Hb_003376_030 Hb_001191_090--Hb_003376_030 Hb_002027_210 Hb_002027_210 Hb_000173_220--Hb_002027_210 Hb_017948_010 Hb_017948_010 Hb_000173_220--Hb_017948_010 Hb_003455_040 Hb_003455_040 Hb_000173_220--Hb_003455_040 Hb_000574_480 Hb_000574_480 Hb_000173_220--Hb_000574_480 Hb_012675_060 Hb_012675_060 Hb_000173_220--Hb_012675_060 Hb_003053_030--Hb_000181_300 Hb_003053_030--Hb_148200_010 Hb_000364_030 Hb_000364_030 Hb_003053_030--Hb_000364_030 Hb_004156_040 Hb_004156_040 Hb_003053_030--Hb_004156_040 Hb_003994_040 Hb_003994_040 Hb_003053_030--Hb_003994_040 Hb_148200_010--Hb_003376_030 Hb_001433_050 Hb_001433_050 Hb_148200_010--Hb_001433_050 Hb_148200_010--Hb_004156_040 Hb_001279_360 Hb_001279_360 Hb_148200_010--Hb_001279_360 Hb_000329_330 Hb_000329_330 Hb_006573_220--Hb_000329_330 Hb_001687_040 Hb_001687_040 Hb_006573_220--Hb_001687_040 Hb_002097_060 Hb_002097_060 Hb_006573_220--Hb_002097_060 Hb_006573_220--Hb_003376_030 Hb_007382_150 Hb_007382_150 Hb_006573_220--Hb_007382_150 Hb_000193_120 Hb_000193_120 Hb_000181_300--Hb_000193_120 Hb_000012_100 Hb_000012_100 Hb_000181_300--Hb_000012_100 Hb_002374_390 Hb_002374_390 Hb_000181_300--Hb_002374_390 Hb_000103_010 Hb_000103_010 Hb_000181_300--Hb_000103_010 Hb_003376_030--Hb_003455_040 Hb_003376_030--Hb_002097_060 Hb_000146_020 Hb_000146_020 Hb_003376_030--Hb_000146_020 Hb_001160_030 Hb_001160_030 Hb_003376_030--Hb_001160_030 Hb_003376_030--Hb_002027_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.0635 9.20075 14.9937 26.0888 23.6314 30.7224
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
75.9829 85.6882 63.6378 23.7227 17.1234

CAGE analysis