Hb_001191_110

Information

Type -
Description -
Location Contig1191: 113768-119746
Sequence    

Annotation

kegg
ID rcu:RCOM_0297100
description sur2 hydroxylase/desaturase, putative (EC:1.14.13.72)
nr
ID XP_002527113.1
description sur2 hydroxylase/desaturase, putative [Ricinus communis]
swissprot
ID Q9AST3
description Sphinganine C(4)-monooxygenase 2 OS=Arabidopsis thaliana GN=SBH2 PE=1 SV=1
trembl
ID B9SM94
description Sur2 hydroxylase/desaturase, putative OS=Ricinus communis GN=RCOM_0297100 PE=4 SV=1
Gene Ontology
ID GO:0016021
description sphinganine c -monooxygenase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05649: 117643-117749
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001191_110 0.0 - - sur2 hydroxylase/desaturase, putative [Ricinus communis]
2 Hb_000696_010 0.069966427 - - RING-H2 finger protein ATL4M, putative [Ricinus communis]
3 Hb_003671_010 0.0822615939 - - PREDICTED: protein transport protein SFT2 isoform X1 [Jatropha curcas]
4 Hb_002375_040 0.0897488472 - - PREDICTED: 15 kDa selenoprotein [Jatropha curcas]
5 Hb_000107_080 0.0986428912 - - PREDICTED: uncharacterized protein LOC105641009 [Jatropha curcas]
6 Hb_000146_040 0.0988411965 - - PREDICTED: reticulon-like protein B11 [Jatropha curcas]
7 Hb_000594_050 0.1022022811 - - PREDICTED: pH-response regulator protein palA/RIM20 isoform X1 [Jatropha curcas]
8 Hb_004157_100 0.1033730678 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
9 Hb_006810_030 0.1047322478 - - Uncharacterized protein isoform 1 [Theobroma cacao]
10 Hb_000004_020 0.105399138 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000676_080 0.1064576387 - - PREDICTED: uncharacterized WD repeat-containing protein C17D11.16 [Jatropha curcas]
12 Hb_033286_010 0.1090652566 - - PREDICTED: probable beta-1,3-galactosyltransferase 14 [Jatropha curcas]
13 Hb_000184_070 0.1101439497 - - PREDICTED: uncharacterized protein LOC105641537 isoform X1 [Jatropha curcas]
14 Hb_054745_010 0.1102228302 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001699_100 0.1110279812 - - PREDICTED: calmodulin-lysine N-methyltransferase [Jatropha curcas]
16 Hb_000107_230 0.1112089306 - - unknown [Medicago truncatula]
17 Hb_086085_020 0.1114316192 - - Non-imprinted in Prader-Willi/Angelman syndrome region protein isoform 3 [Theobroma cacao]
18 Hb_030736_020 0.1131473142 - - conserved hypothetical protein [Ricinus communis]
19 Hb_004102_170 0.1145347923 - - PREDICTED: lys-63-specific deubiquitinase BRCC36-like [Jatropha curcas]
20 Hb_003528_030 0.1155466413 - - PREDICTED: eukaryotic translation initiation factor 3 subunit L-like [Jatropha curcas]

Gene co-expression network

sample Hb_001191_110 Hb_001191_110 Hb_000696_010 Hb_000696_010 Hb_001191_110--Hb_000696_010 Hb_003671_010 Hb_003671_010 Hb_001191_110--Hb_003671_010 Hb_002375_040 Hb_002375_040 Hb_001191_110--Hb_002375_040 Hb_000107_080 Hb_000107_080 Hb_001191_110--Hb_000107_080 Hb_000146_040 Hb_000146_040 Hb_001191_110--Hb_000146_040 Hb_000594_050 Hb_000594_050 Hb_001191_110--Hb_000594_050 Hb_000696_010--Hb_003671_010 Hb_000696_010--Hb_000146_040 Hb_000696_010--Hb_002375_040 Hb_005797_010 Hb_005797_010 Hb_000696_010--Hb_005797_010 Hb_033286_010 Hb_033286_010 Hb_000696_010--Hb_033286_010 Hb_003671_010--Hb_033286_010 Hb_003683_020 Hb_003683_020 Hb_003671_010--Hb_003683_020 Hb_002785_050 Hb_002785_050 Hb_003671_010--Hb_002785_050 Hb_000260_330 Hb_000260_330 Hb_003671_010--Hb_000260_330 Hb_001882_050 Hb_001882_050 Hb_003671_010--Hb_001882_050 Hb_002375_040--Hb_003671_010 Hb_001205_250 Hb_001205_250 Hb_002375_040--Hb_001205_250 Hb_003964_070 Hb_003964_070 Hb_002375_040--Hb_003964_070 Hb_002375_040--Hb_000594_050 Hb_000331_370 Hb_000331_370 Hb_000107_080--Hb_000331_370 Hb_000890_230 Hb_000890_230 Hb_000107_080--Hb_000890_230 Hb_004157_100 Hb_004157_100 Hb_000107_080--Hb_004157_100 Hb_000107_080--Hb_000146_040 Hb_000107_080--Hb_000696_010 Hb_000140_350 Hb_000140_350 Hb_000146_040--Hb_000140_350 Hb_000146_040--Hb_033286_010 Hb_004102_170 Hb_004102_170 Hb_000146_040--Hb_004102_170 Hb_000477_100 Hb_000477_100 Hb_000146_040--Hb_000477_100 Hb_007481_010 Hb_007481_010 Hb_000146_040--Hb_007481_010 Hb_000146_040--Hb_005797_010 Hb_000181_130 Hb_000181_130 Hb_000594_050--Hb_000181_130 Hb_003750_050 Hb_003750_050 Hb_000594_050--Hb_003750_050 Hb_000107_230 Hb_000107_230 Hb_000594_050--Hb_000107_230 Hb_006588_170 Hb_006588_170 Hb_000594_050--Hb_006588_170 Hb_002811_180 Hb_002811_180 Hb_000594_050--Hb_002811_180 Hb_002641_060 Hb_002641_060 Hb_000594_050--Hb_002641_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.95843 3.19853 6.86442 16.3657 8.18563 12.6375
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.57291 7.16667 5.04489 7.64152 6.60939

CAGE analysis