Hb_001195_060

Information

Type -
Description -
Location Contig1195: 37203-42129
Sequence    

Annotation

kegg
ID rcu:RCOM_1594920
description Protein yrdA, putative
nr
ID XP_002510412.1
description Protein yrdA, putative [Ricinus communis]
swissprot
ID Q9FWR5
description Gamma carbonic anhydrase 1, mitochondrial OS=Arabidopsis thaliana GN=GAMMACA1 PE=1 SV=1
trembl
ID B9R7W9
description Protein yrdA, putative OS=Ricinus communis GN=RCOM_1594920 PE=4 SV=1
Gene Ontology
ID GO:0005747
description gamma carbonic anhydrase mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05768: 37446-37537 , PASA_asmbl_05769: 38980-42088
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001195_060 0.0 - - Protein yrdA, putative [Ricinus communis]
2 Hb_005167_010 0.0513307884 - - PREDICTED: serine/threonine-protein kinase At5g01020 isoform X1 [Jatropha curcas]
3 Hb_000920_200 0.0749482892 - - PREDICTED: E3 ubiquitin-protein ligase SINAT5-like isoform X1 [Jatropha curcas]
4 Hb_005765_050 0.0784650086 - - PREDICTED: dnaJ homolog subfamily B member 4-like [Populus euphratica]
5 Hb_012799_170 0.0790497887 - - PREDICTED: protein GLC8 isoform X2 [Jatropha curcas]
6 Hb_000127_140 0.0810324449 - - transporter-related family protein [Populus trichocarpa]
7 Hb_004545_110 0.0819929684 - - DHHC-type zinc finger family protein isoform 1 [Theobroma cacao]
8 Hb_000080_130 0.0821411373 - - PREDICTED: TBC1 domain family member 22B [Jatropha curcas]
9 Hb_002184_090 0.0822084462 - - DNA binding protein, putative [Ricinus communis]
10 Hb_000666_100 0.0831865834 - - Actin-related protein 2/3 complex subunit 2 isoform 2 [Theobroma cacao]
11 Hb_000774_020 0.0834879113 - - PREDICTED: DNA damage-inducible protein 1 [Jatropha curcas]
12 Hb_003119_060 0.0854323558 - - PREDICTED: dicarboxylate transporter 2.1, chloroplastic [Jatropha curcas]
13 Hb_003057_060 0.0877078993 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000140_090 0.0887101572 - - PREDICTED: C-terminal binding protein AN [Jatropha curcas]
15 Hb_006573_190 0.0893564193 - - PREDICTED: probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial [Jatropha curcas]
16 Hb_004257_010 0.0896240479 - - CMP-sialic acid transporter, putative [Ricinus communis]
17 Hb_000566_120 0.0909989512 - - PREDICTED: uncharacterized protein LOC105123035 isoform X1 [Populus euphratica]
18 Hb_008147_090 0.0912148323 - - conserved hypothetical protein [Ricinus communis]
19 Hb_006132_090 0.0926300624 - - PREDICTED: origin of replication complex subunit 5 isoform X1 [Jatropha curcas]
20 Hb_010931_130 0.0930948119 - - PREDICTED: mitogen-activated protein kinase 20 [Jatropha curcas]

Gene co-expression network

sample Hb_001195_060 Hb_001195_060 Hb_005167_010 Hb_005167_010 Hb_001195_060--Hb_005167_010 Hb_000920_200 Hb_000920_200 Hb_001195_060--Hb_000920_200 Hb_005765_050 Hb_005765_050 Hb_001195_060--Hb_005765_050 Hb_012799_170 Hb_012799_170 Hb_001195_060--Hb_012799_170 Hb_000127_140 Hb_000127_140 Hb_001195_060--Hb_000127_140 Hb_004545_110 Hb_004545_110 Hb_001195_060--Hb_004545_110 Hb_005167_010--Hb_012799_170 Hb_006132_090 Hb_006132_090 Hb_005167_010--Hb_006132_090 Hb_000080_130 Hb_000080_130 Hb_005167_010--Hb_000080_130 Hb_005167_010--Hb_004545_110 Hb_007975_060 Hb_007975_060 Hb_005167_010--Hb_007975_060 Hb_001218_030 Hb_001218_030 Hb_000920_200--Hb_001218_030 Hb_002119_130 Hb_002119_130 Hb_000920_200--Hb_002119_130 Hb_006573_190 Hb_006573_190 Hb_000920_200--Hb_006573_190 Hb_001828_150 Hb_001828_150 Hb_000920_200--Hb_001828_150 Hb_000853_150 Hb_000853_150 Hb_000920_200--Hb_000853_150 Hb_000173_410 Hb_000173_410 Hb_005765_050--Hb_000173_410 Hb_000608_050 Hb_000608_050 Hb_005765_050--Hb_000608_050 Hb_001300_150 Hb_001300_150 Hb_005765_050--Hb_001300_150 Hb_000454_090 Hb_000454_090 Hb_005765_050--Hb_000454_090 Hb_008841_020 Hb_008841_020 Hb_005765_050--Hb_008841_020 Hb_004078_040 Hb_004078_040 Hb_005765_050--Hb_004078_040 Hb_000566_120 Hb_000566_120 Hb_012799_170--Hb_000566_120 Hb_003622_030 Hb_003622_030 Hb_012799_170--Hb_003622_030 Hb_001322_110 Hb_001322_110 Hb_012799_170--Hb_001322_110 Hb_002540_080 Hb_002540_080 Hb_012799_170--Hb_002540_080 Hb_007894_010 Hb_007894_010 Hb_000127_140--Hb_007894_010 Hb_008147_090 Hb_008147_090 Hb_000127_140--Hb_008147_090 Hb_001951_130 Hb_001951_130 Hb_000127_140--Hb_001951_130 Hb_000666_100 Hb_000666_100 Hb_000127_140--Hb_000666_100 Hb_002184_090 Hb_002184_090 Hb_000127_140--Hb_002184_090 Hb_004545_110--Hb_000666_100 Hb_004545_110--Hb_000080_130 Hb_008616_050 Hb_008616_050 Hb_004545_110--Hb_008616_050 Hb_133702_010 Hb_133702_010 Hb_004545_110--Hb_133702_010 Hb_000347_240 Hb_000347_240 Hb_004545_110--Hb_000347_240 Hb_005800_030 Hb_005800_030 Hb_004545_110--Hb_005800_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.4493 7.11942 25.5297 29.5827 11.1676 9.63755
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.7045 24.5541 23.3757 14.8291 20.0957

CAGE analysis