Hb_001195_100

Information

Type -
Description -
Location Contig1195: 50471-51736
Sequence    

Annotation

kegg
ID rcu:RCOM_1594870
description hypothetical protein
nr
ID XP_012071887.1
description PREDICTED: uncharacterized protein LOC105633812 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KU58
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04448 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05774: 50472-51623
cDNA
(Sanger)
(ID:Location)		 001_M03.ab1: 50592-51538 , 005_M22.ab1: 50592-51538 , 022_O07.ab1: 50656-51540 , 033_D14.ab1: 50525-51133 , 038_D05.ab1: 50586-51583 , 039_D08.ab1: 50525-51133 , 043_D22.ab1: 50592-51538 , 045_B15.ab1: 50612-51550 , 047_B07.ab1: 50567-50687 , 052_J10.ab1: 50755-51538 , 052_K13.ab1: 50525-51133

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001195_100 0.0 - - PREDICTED: uncharacterized protein LOC105633812 [Jatropha curcas]
2 Hb_001975_070 0.1017515567 - - eukaryotic translation elongation factor 1B alpha-subunit [Hevea brasiliensis]
3 Hb_025048_030 0.1021407248 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Jatropha curcas]
4 Hb_005333_020 0.1114396105 - - PREDICTED: protein CutA, chloroplastic [Jatropha curcas]
5 Hb_001341_030 0.1133004402 transcription factor TF Family: LOB LOB domain-containing protein 1 [Theobroma cacao]
6 Hb_001009_050 0.1134828831 - - PREDICTED: WD repeat-containing protein 74 isoform X2 [Jatropha curcas]
7 Hb_153150_010 0.1146652929 - - PREDICTED: serine/threonine-protein phosphatase PP2A-3 catalytic subunit [Eucalyptus grandis]
8 Hb_004232_010 0.1170827239 - - PREDICTED: uncharacterized protein LOC105650678 [Jatropha curcas]
9 Hb_005147_110 0.1182720675 - - eukaryotic translation elongation factor 1B gamma-subunit [Hevea brasiliensis]
10 Hb_001348_140 0.1275810769 - - conserved hypothetical protein [Ricinus communis]
11 Hb_006588_090 0.1291298775 - - PREDICTED: uncharacterized protein At4g28440 [Jatropha curcas]
12 Hb_005271_070 0.1294149767 - - PREDICTED: RNA-binding protein NOB1 [Jatropha curcas]
13 Hb_011930_010 0.130382207 - - PREDICTED: outer envelope pore protein 24B, chloroplastic-like [Jatropha curcas]
14 Hb_011609_030 0.1305360902 - - conserved hypothetical protein 13 [Hevea brasiliensis]
15 Hb_000500_290 0.133863144 - - bromodomain-containing protein, putative [Ricinus communis]
16 Hb_000640_210 0.1341697075 - - hypothetical protein JCGZ_14045 [Jatropha curcas]
17 Hb_000270_450 0.1344689091 - - PREDICTED: uncharacterized protein LOC105167687 [Sesamum indicum]
18 Hb_018663_020 0.1348606329 - - PREDICTED: nuclear pore complex protein NUP1 isoform X2 [Jatropha curcas]
19 Hb_010298_020 0.1351270646 - - PREDICTED: uncharacterized protein At2g02148 isoform X4 [Vitis vinifera]
20 Hb_000029_160 0.135606838 - - Nitrilase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001195_100 Hb_001195_100 Hb_001975_070 Hb_001975_070 Hb_001195_100--Hb_001975_070 Hb_025048_030 Hb_025048_030 Hb_001195_100--Hb_025048_030 Hb_005333_020 Hb_005333_020 Hb_001195_100--Hb_005333_020 Hb_001341_030 Hb_001341_030 Hb_001195_100--Hb_001341_030 Hb_001009_050 Hb_001009_050 Hb_001195_100--Hb_001009_050 Hb_153150_010 Hb_153150_010 Hb_001195_100--Hb_153150_010 Hb_005147_110 Hb_005147_110 Hb_001975_070--Hb_005147_110 Hb_001975_070--Hb_001009_050 Hb_000029_160 Hb_000029_160 Hb_001975_070--Hb_000029_160 Hb_002960_060 Hb_002960_060 Hb_001975_070--Hb_002960_060 Hb_001975_070--Hb_001341_030 Hb_000373_270 Hb_000373_270 Hb_001975_070--Hb_000373_270 Hb_010298_020 Hb_010298_020 Hb_025048_030--Hb_010298_020 Hb_005271_070 Hb_005271_070 Hb_025048_030--Hb_005271_070 Hb_001348_140 Hb_001348_140 Hb_025048_030--Hb_001348_140 Hb_006588_090 Hb_006588_090 Hb_025048_030--Hb_006588_090 Hb_004232_010 Hb_004232_010 Hb_025048_030--Hb_004232_010 Hb_005333_020--Hb_153150_010 Hb_000465_310 Hb_000465_310 Hb_005333_020--Hb_000465_310 Hb_005333_020--Hb_005147_110 Hb_005333_020--Hb_001975_070 Hb_011930_010 Hb_011930_010 Hb_005333_020--Hb_011930_010 Hb_000640_210 Hb_000640_210 Hb_005333_020--Hb_000640_210 Hb_001341_030--Hb_000373_270 Hb_001341_030--Hb_005147_110 Hb_004310_060 Hb_004310_060 Hb_001341_030--Hb_004310_060 Hb_018663_020 Hb_018663_020 Hb_001341_030--Hb_018663_020 Hb_001969_040 Hb_001969_040 Hb_001341_030--Hb_001969_040 Hb_001009_050--Hb_018663_020 Hb_000270_450 Hb_000270_450 Hb_001009_050--Hb_000270_450 Hb_001623_550 Hb_001623_550 Hb_001009_050--Hb_001623_550 Hb_025048_040 Hb_025048_040 Hb_001009_050--Hb_025048_040 Hb_009615_110 Hb_009615_110 Hb_001009_050--Hb_009615_110 Hb_153150_010--Hb_005147_110 Hb_005314_010 Hb_005314_010 Hb_153150_010--Hb_005314_010 Hb_008725_250 Hb_008725_250 Hb_153150_010--Hb_008725_250 Hb_153150_010--Hb_000029_160 Hb_153150_010--Hb_000465_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1260.55 546.684 150.133 53.1553 756.306 898.195
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
798.43 336.037 213.296 281.07 11.0739

CAGE analysis