Hb_001195_110

Information

Type transcription factor
Description TF Family: TUB
Location Contig1195: 57024-60877
Sequence    

Annotation

kegg
ID rcu:RCOM_1594760
description phosphoric diester hydrolase, putative
nr
ID XP_002510406.1
description phosphoric diester hydrolase, putative [Ricinus communis]
swissprot
ID Q6Z2G9
description Tubby-like F-box protein 5 OS=Oryza sativa subsp. japonica GN=TULP5 PE=2 SV=1
trembl
ID B9R7W3
description Tubby-like F-box protein OS=Ricinus communis GN=RCOM_1594760 PE=3 SV=1
Gene Ontology
ID GO:0016787
description tubby-like f-box protein 5 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05775: 57047-60864
cDNA
(Sanger)
(ID:Location)		 022_M12.ab1: 57146-58502

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001195_110 0.0 transcription factor TF Family: TUB phosphoric diester hydrolase, putative [Ricinus communis]
2 Hb_012807_120 0.109256598 - - metal ion binding protein, putative [Ricinus communis]
3 Hb_002025_230 0.1100673263 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein NUTCRACKER-like [Populus euphratica]
4 Hb_000365_350 0.1150004359 - - PREDICTED: uncharacterized protein LOC105649068 [Jatropha curcas]
5 Hb_011316_030 0.1294702833 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 7 isoform X1 [Jatropha curcas]
6 Hb_001140_080 0.1323589162 - - PREDICTED: membrane steroid-binding protein 2-like [Jatropha curcas]
7 Hb_000138_010 0.1359498116 - - hypothetical protein RCOM_0504460 [Ricinus communis]
8 Hb_000138_190 0.1360996989 - - omega-6 fatty acid desaturase [Hevea brasiliensis]
9 Hb_000088_180 0.1399077751 - - hypothetical protein JCGZ_11198 [Jatropha curcas]
10 Hb_004254_040 0.1406468172 - - PREDICTED: uncharacterized protein LOC105650678 [Jatropha curcas]
11 Hb_000416_100 0.14182742 - - PREDICTED: uncharacterized protein LOC105649721 [Jatropha curcas]
12 Hb_002388_060 0.1428218974 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000613_020 0.1431063208 - - PREDICTED: U-box domain-containing protein 15 [Jatropha curcas]
14 Hb_098315_100 0.1437041302 - - PREDICTED: uncharacterized protein LOC105636025 isoform X1 [Jatropha curcas]
15 Hb_005028_010 0.1443163998 - - interferon-induced guanylate-binding protein, putative [Ricinus communis]
16 Hb_003216_110 0.1445644336 - - PREDICTED: vacuolar protein-sorting-associated protein 11 homolog [Jatropha curcas]
17 Hb_000282_150 0.1448901481 - - PREDICTED: probable beta-1,3-galactosyltransferase 12 [Jatropha curcas]
18 Hb_000062_230 0.1451392019 - - PREDICTED: probable thimet oligopeptidase isoform X1 [Jatropha curcas]
19 Hb_005754_020 0.1458663249 - - PREDICTED: mitogen-activated protein kinase homolog NTF4 [Jatropha curcas]
20 Hb_003506_040 0.1480131872 - - hypothetical protein PHAVU_009G052500g [Phaseolus vulgaris]

Gene co-expression network

sample Hb_001195_110 Hb_001195_110 Hb_012807_120 Hb_012807_120 Hb_001195_110--Hb_012807_120 Hb_002025_230 Hb_002025_230 Hb_001195_110--Hb_002025_230 Hb_000365_350 Hb_000365_350 Hb_001195_110--Hb_000365_350 Hb_011316_030 Hb_011316_030 Hb_001195_110--Hb_011316_030 Hb_001140_080 Hb_001140_080 Hb_001195_110--Hb_001140_080 Hb_000138_010 Hb_000138_010 Hb_001195_110--Hb_000138_010 Hb_006478_070 Hb_006478_070 Hb_012807_120--Hb_006478_070 Hb_012807_120--Hb_001140_080 Hb_012807_120--Hb_000365_350 Hb_000320_440 Hb_000320_440 Hb_012807_120--Hb_000320_440 Hb_000088_180 Hb_000088_180 Hb_012807_120--Hb_000088_180 Hb_000573_040 Hb_000573_040 Hb_012807_120--Hb_000573_040 Hb_000138_190 Hb_000138_190 Hb_002025_230--Hb_000138_190 Hb_007786_010 Hb_007786_010 Hb_002025_230--Hb_007786_010 Hb_000062_230 Hb_000062_230 Hb_002025_230--Hb_000062_230 Hb_001846_060 Hb_001846_060 Hb_002025_230--Hb_001846_060 Hb_002377_040 Hb_002377_040 Hb_002025_230--Hb_002377_040 Hb_000050_120 Hb_000050_120 Hb_000365_350--Hb_000050_120 Hb_000365_350--Hb_000088_180 Hb_004032_460 Hb_004032_460 Hb_000365_350--Hb_004032_460 Hb_098315_100 Hb_098315_100 Hb_000365_350--Hb_098315_100 Hb_000365_350--Hb_006478_070 Hb_003777_220 Hb_003777_220 Hb_011316_030--Hb_003777_220 Hb_000176_140 Hb_000176_140 Hb_011316_030--Hb_000176_140 Hb_000491_080 Hb_000491_080 Hb_011316_030--Hb_000491_080 Hb_000179_250 Hb_000179_250 Hb_011316_030--Hb_000179_250 Hb_001776_080 Hb_001776_080 Hb_011316_030--Hb_001776_080 Hb_127979_010 Hb_127979_010 Hb_011316_030--Hb_127979_010 Hb_000282_150 Hb_000282_150 Hb_001140_080--Hb_000282_150 Hb_000270_450 Hb_000270_450 Hb_001140_080--Hb_000270_450 Hb_001140_080--Hb_006478_070 Hb_003506_040 Hb_003506_040 Hb_001140_080--Hb_003506_040 Hb_005028_010 Hb_005028_010 Hb_001140_080--Hb_005028_010 Hb_001141_080 Hb_001141_080 Hb_000138_010--Hb_001141_080 Hb_005147_110 Hb_005147_110 Hb_000138_010--Hb_005147_110 Hb_000138_010--Hb_000282_150 Hb_018663_020 Hb_018663_020 Hb_000138_010--Hb_018663_020 Hb_001341_030 Hb_001341_030 Hb_000138_010--Hb_001341_030 Hb_000500_290 Hb_000500_290 Hb_000138_010--Hb_000500_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
552.337 44.9259 28.934 18.5563 291.698 321.033
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
236.384 39.5903 127.377 35.1336 39.4197

CAGE analysis