Hb_001195_120

Information

Type -
Description -
Location Contig1195: 61244-62932
Sequence    

Annotation

kegg
ID rcu:RCOM_1594750
description oxidoreductase, putative
nr
ID XP_002510405.1
description oxidoreductase, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9R7W2
description Oxidoreductase, putative OS=Ricinus communis GN=RCOM_1594750 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05779: 62480-62681 , PASA_asmbl_05781: 63339-63465
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001195_120 0.0 - - oxidoreductase, putative [Ricinus communis]
2 Hb_028207_020 0.1498386038 - - PREDICTED: uncharacterized protein LOC105650315 isoform X2 [Jatropha curcas]
3 Hb_163591_010 0.1501582699 - - PREDICTED: amidase 1-like isoform X2 [Populus euphratica]
4 Hb_001021_160 0.150678702 - - PREDICTED: homeobox protein LUMINIDEPENDENS [Jatropha curcas]
5 Hb_001807_010 0.1514654646 - - hypothetical protein MTR_6g077630 [Medicago truncatula]
6 Hb_004800_150 0.1514666038 transcription factor TF Family: SNF2 PREDICTED: ATP-dependent DNA helicase DDM1 [Jatropha curcas]
7 Hb_188996_010 0.1524422944 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000122_010 0.1538848628 - - amino acid transporter, putative [Ricinus communis]
9 Hb_000985_040 0.1612866947 transcription factor TF Family: Orphans B-box type zinc finger protein with CCT domain isoform 1 [Theobroma cacao]
10 Hb_004611_030 0.1615347551 - - structural maintenance of chromosomes 5 smc5, putative [Ricinus communis]
11 Hb_000287_050 0.1632003163 - - PREDICTED: uncharacterized protein LOC105637398 [Jatropha curcas]
12 Hb_001269_200 0.1646969844 - - pentatricopeptide repeat-containing family protein [Populus trichocarpa]
13 Hb_002890_150 0.1648698338 - - PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial [Jatropha curcas]
14 Hb_011249_030 0.1678711565 - - PREDICTED: uncharacterized protein LOC105641285 [Jatropha curcas]
15 Hb_000009_610 0.1687038494 - - PREDICTED: uncharacterized protein LOC105639638 isoform X2 [Jatropha curcas]
16 Hb_011344_070 0.169739126 - - PREDICTED: non-specific lipid-transfer protein [Jatropha curcas]
17 Hb_003849_040 0.1704266526 - - PREDICTED: serine/threonine-protein kinase AFC2-like [Jatropha curcas]
18 Hb_000165_140 0.1705580741 - - PREDICTED: inactive receptor-like serine/threonine-protein kinase At2g40270 isoform X2 [Populus euphratica]
19 Hb_008511_060 0.1712966598 - - PREDICTED: probable receptor-like serine/threonine-protein kinase At4g34500 [Jatropha curcas]
20 Hb_000453_040 0.1724779017 - - Triosephosphate isomerase, cytosolic [Gossypium arboreum]

Gene co-expression network

sample Hb_001195_120 Hb_001195_120 Hb_028207_020 Hb_028207_020 Hb_001195_120--Hb_028207_020 Hb_163591_010 Hb_163591_010 Hb_001195_120--Hb_163591_010 Hb_001021_160 Hb_001021_160 Hb_001195_120--Hb_001021_160 Hb_001807_010 Hb_001807_010 Hb_001195_120--Hb_001807_010 Hb_004800_150 Hb_004800_150 Hb_001195_120--Hb_004800_150 Hb_188996_010 Hb_188996_010 Hb_001195_120--Hb_188996_010 Hb_006326_050 Hb_006326_050 Hb_028207_020--Hb_006326_050 Hb_002255_040 Hb_002255_040 Hb_028207_020--Hb_002255_040 Hb_010367_030 Hb_010367_030 Hb_028207_020--Hb_010367_030 Hb_065755_030 Hb_065755_030 Hb_028207_020--Hb_065755_030 Hb_003581_210 Hb_003581_210 Hb_028207_020--Hb_003581_210 Hb_011249_030 Hb_011249_030 Hb_028207_020--Hb_011249_030 Hb_001662_040 Hb_001662_040 Hb_163591_010--Hb_001662_040 Hb_009449_060 Hb_009449_060 Hb_163591_010--Hb_009449_060 Hb_000002_120 Hb_000002_120 Hb_163591_010--Hb_000002_120 Hb_000139_220 Hb_000139_220 Hb_163591_010--Hb_000139_220 Hb_010287_030 Hb_010287_030 Hb_163591_010--Hb_010287_030 Hb_002928_010 Hb_002928_010 Hb_163591_010--Hb_002928_010 Hb_000453_040 Hb_000453_040 Hb_001021_160--Hb_000453_040 Hb_003861_070 Hb_003861_070 Hb_001021_160--Hb_003861_070 Hb_000287_050 Hb_000287_050 Hb_001021_160--Hb_000287_050 Hb_008511_060 Hb_008511_060 Hb_001021_160--Hb_008511_060 Hb_001021_160--Hb_011249_030 Hb_001021_160--Hb_028207_020 Hb_001807_010--Hb_002928_010 Hb_001269_200 Hb_001269_200 Hb_001807_010--Hb_001269_200 Hb_000139_190 Hb_000139_190 Hb_001807_010--Hb_000139_190 Hb_039605_010 Hb_039605_010 Hb_001807_010--Hb_039605_010 Hb_000416_050 Hb_000416_050 Hb_001807_010--Hb_000416_050 Hb_004631_190 Hb_004631_190 Hb_001807_010--Hb_004631_190 Hb_004611_030 Hb_004611_030 Hb_004800_150--Hb_004611_030 Hb_004800_150--Hb_163591_010 Hb_009659_030 Hb_009659_030 Hb_004800_150--Hb_009659_030 Hb_164945_010 Hb_164945_010 Hb_004800_150--Hb_164945_010 Hb_000009_610 Hb_000009_610 Hb_004800_150--Hb_000009_610 Hb_011344_070 Hb_011344_070 Hb_004800_150--Hb_011344_070 Hb_000169_190 Hb_000169_190 Hb_188996_010--Hb_000169_190 Hb_007123_070 Hb_007123_070 Hb_188996_010--Hb_007123_070 Hb_188996_010--Hb_000453_040 Hb_003994_140 Hb_003994_140 Hb_188996_010--Hb_003994_140 Hb_010053_040 Hb_010053_040 Hb_188996_010--Hb_010053_040 Hb_003891_070 Hb_003891_070 Hb_188996_010--Hb_003891_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.04505 1.85177 5.08338 2.15129 2.3948 1.39878
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.35541 0.453778 0.384631 0.877679 0.475989

CAGE analysis