Hb_001195_180

Information

Type transcription factor
Description TF Family: zf-HD
Location Contig1195: 83960-84847
Sequence    

Annotation

kegg
ID pop:POPTR_0002s03660g
description POPTRDRAFT_551009; zinc finger family protein
nr
ID XP_012071869.1
description PREDICTED: zinc-finger homeodomain protein 5 [Jatropha curcas]
swissprot
ID Q9FRL5
description Zinc-finger homeodomain protein 5 OS=Arabidopsis thaliana GN=ZHD5 PE=1 SV=1
trembl
ID A0A067L339
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04439 PE=4 SV=1
Gene Ontology
ID GO:0003677
description zinc-finger homeodomain protein 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05790: 85153-85370
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001195_180 0.0 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 5 [Jatropha curcas]
2 Hb_023765_020 0.2194120247 - - PREDICTED: putative SNAP25 homologous protein SNAP30 [Populus euphratica]
3 Hb_000282_050 0.2228693467 - - calcineurin B, putative [Ricinus communis]
4 Hb_003399_100 0.2255894824 - - PREDICTED: putative cyclin-A3-1 [Jatropha curcas]
5 Hb_010998_050 0.2269980751 - - PREDICTED: kinesin-like protein KIF22 isoform X2 [Jatropha curcas]
6 Hb_000529_150 0.2280312086 - - protein with unknown function [Ricinus communis]
7 Hb_001454_070 0.2307554416 - - Uveal autoantigen with coiled-coil domains and ankyrin repeats isoform 1 [Theobroma cacao]
8 Hb_030627_070 0.2333325894 - - histone H4 [Zea mays]
9 Hb_001252_240 0.2346032452 - - PREDICTED: protein SPIRAL1-like 3 [Jatropha curcas]
10 Hb_000700_030 0.2373618813 - - PREDICTED: zinc finger protein 3 [Jatropha curcas]
11 Hb_005725_150 0.2468733602 - - PREDICTED: kinesin-related protein 11 isoform X1 [Jatropha curcas]
12 Hb_000544_030 0.2477211505 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000260_650 0.2520774253 - - PREDICTED: protein PFC0760c [Jatropha curcas]
14 Hb_004162_230 0.2550647786 - - PREDICTED: histone H2B [Jatropha curcas]
15 Hb_009620_100 0.2568272949 - - hypothetical protein JCGZ_22628 [Jatropha curcas]
16 Hb_062038_010 0.2604605445 transcription factor TF Family: B3 PREDICTED: uncharacterized protein LOC104882266 isoform X2 [Vitis vinifera]
17 Hb_033594_040 0.2608122264 - - PREDICTED: heptahelical transmembrane protein 4-like isoform X2 [Jatropha curcas]
18 Hb_005375_050 0.2610413782 - - inorganic pyrophosphatase, putative [Ricinus communis]
19 Hb_000878_140 0.2613190245 - - PREDICTED: cell division cycle 20.2, cofactor of APC complex-like [Jatropha curcas]
20 Hb_006275_060 0.2620809308 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]

Gene co-expression network

sample Hb_001195_180 Hb_001195_180 Hb_023765_020 Hb_023765_020 Hb_001195_180--Hb_023765_020 Hb_000282_050 Hb_000282_050 Hb_001195_180--Hb_000282_050 Hb_003399_100 Hb_003399_100 Hb_001195_180--Hb_003399_100 Hb_010998_050 Hb_010998_050 Hb_001195_180--Hb_010998_050 Hb_000529_150 Hb_000529_150 Hb_001195_180--Hb_000529_150 Hb_001454_070 Hb_001454_070 Hb_001195_180--Hb_001454_070 Hb_023765_020--Hb_001454_070 Hb_001252_240 Hb_001252_240 Hb_023765_020--Hb_001252_240 Hb_000369_010 Hb_000369_010 Hb_023765_020--Hb_000369_010 Hb_000086_700 Hb_000086_700 Hb_023765_020--Hb_000086_700 Hb_000260_800 Hb_000260_800 Hb_023765_020--Hb_000260_800 Hb_001277_280 Hb_001277_280 Hb_023765_020--Hb_001277_280 Hb_188281_030 Hb_188281_030 Hb_000282_050--Hb_188281_030 Hb_000622_130 Hb_000622_130 Hb_000282_050--Hb_000622_130 Hb_007741_130 Hb_007741_130 Hb_000282_050--Hb_007741_130 Hb_007044_090 Hb_007044_090 Hb_000282_050--Hb_007044_090 Hb_124677_030 Hb_124677_030 Hb_000282_050--Hb_124677_030 Hb_004567_010 Hb_004567_010 Hb_000282_050--Hb_004567_010 Hb_002045_190 Hb_002045_190 Hb_003399_100--Hb_002045_190 Hb_030627_070 Hb_030627_070 Hb_003399_100--Hb_030627_070 Hb_006275_060 Hb_006275_060 Hb_003399_100--Hb_006275_060 Hb_005725_150 Hb_005725_150 Hb_003399_100--Hb_005725_150 Hb_003399_100--Hb_010998_050 Hb_089889_010 Hb_089889_010 Hb_003399_100--Hb_089889_010 Hb_036790_030 Hb_036790_030 Hb_010998_050--Hb_036790_030 Hb_000345_410 Hb_000345_410 Hb_010998_050--Hb_000345_410 Hb_002007_280 Hb_002007_280 Hb_010998_050--Hb_002007_280 Hb_000349_230 Hb_000349_230 Hb_010998_050--Hb_000349_230 Hb_000345_130 Hb_000345_130 Hb_010998_050--Hb_000345_130 Hb_005162_130 Hb_005162_130 Hb_010998_050--Hb_005162_130 Hb_000510_230 Hb_000510_230 Hb_000529_150--Hb_000510_230 Hb_031822_010 Hb_031822_010 Hb_000529_150--Hb_031822_010 Hb_000394_110 Hb_000394_110 Hb_000529_150--Hb_000394_110 Hb_003147_070 Hb_003147_070 Hb_000529_150--Hb_003147_070 Hb_002909_020 Hb_002909_020 Hb_000529_150--Hb_002909_020 Hb_118282_010 Hb_118282_010 Hb_000529_150--Hb_118282_010 Hb_001454_070--Hb_001252_240 Hb_001454_070--Hb_000369_010 Hb_100790_010 Hb_100790_010 Hb_001454_070--Hb_100790_010 Hb_001454_070--Hb_000086_700 Hb_171718_020 Hb_171718_020 Hb_001454_070--Hb_171718_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.488142 0.154912 1.95919 1.24172 0.0962214 0.0888567
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.412236 0.555741 0.591628 0.0747323 0

CAGE analysis