Hb_001195_190

Information

Type -
Description -
Location Contig1195: 90532-92475
Sequence    

Annotation

kegg
ID rcu:RCOM_1594460
description hypothetical protein
nr
ID XP_002510397.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID P95141
description Long-chain-fatty-acid--AMP ligase FadD29 OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) GN=fadD29 PE=1 SV=1
trembl
ID B9R7V4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1594460 PE=4 SV=1
Gene Ontology
ID GO:0016874
description disco-interacting protein 2 homolog b-a-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05791: 93272-99014 , PASA_asmbl_05793: 93132-98281
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001195_190 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_010521_020 0.1920035587 - - -
3 Hb_004296_010 0.2053277316 - - PREDICTED: activator of 90 kDa heat shock protein ATPase homolog 1 [Jatropha curcas]
4 Hb_000505_110 0.2055884785 - - PREDICTED: pyrophosphate-energized vacuolar membrane proton pump [Jatropha curcas]
5 Hb_001767_040 0.2202869029 - - dehydroascorbate reductase, putative [Ricinus communis]
6 Hb_001269_310 0.2235399895 - - PREDICTED: probable CCR4-associated factor 1 homolog 6 [Jatropha curcas]
7 Hb_000421_130 0.2323556489 transcription factor TF Family: C2C2-Dof zinc finger protein, putative [Ricinus communis]
8 Hb_000101_220 0.235507137 - - anthranilate synthase component I, putative [Ricinus communis]
9 Hb_000062_030 0.2421916346 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g67720 isoform X2 [Jatropha curcas]
10 Hb_000189_430 0.2461703596 - - unnamed protein product [Vitis vinifera]
11 Hb_000941_140 0.2489211905 - - PREDICTED: activator of 90 kDa heat shock protein ATPase homolog 1 [Jatropha curcas]
12 Hb_002942_090 0.2505940309 - - DNAJ heat shock N-terminal domain-containing protein, putative [Theobroma cacao]
13 Hb_001051_090 0.2509613124 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 11 [Jatropha curcas]
14 Hb_017491_070 0.2520000401 - - PREDICTED: dnaJ homolog subfamily B member 6-like isoform X1 [Jatropha curcas]
15 Hb_018118_050 0.2620992296 - - hypothetical protein POPTR_0006s07370g [Populus trichocarpa]
16 Hb_154114_030 0.2670175514 - - amino acid binding protein, putative [Ricinus communis]
17 Hb_006618_040 0.2684452622 - - PREDICTED: hsp70-Hsp90 organizing protein 3-like [Jatropha curcas]
18 Hb_008147_050 0.270785082 - - PREDICTED: uncharacterized protein LOC105646845 [Jatropha curcas]
19 Hb_013394_060 0.2712042481 - - PREDICTED: IST1-like protein isoform X1 [Jatropha curcas]
20 Hb_046198_020 0.2717351953 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001195_190 Hb_001195_190 Hb_010521_020 Hb_010521_020 Hb_001195_190--Hb_010521_020 Hb_004296_010 Hb_004296_010 Hb_001195_190--Hb_004296_010 Hb_000505_110 Hb_000505_110 Hb_001195_190--Hb_000505_110 Hb_001767_040 Hb_001767_040 Hb_001195_190--Hb_001767_040 Hb_001269_310 Hb_001269_310 Hb_001195_190--Hb_001269_310 Hb_000421_130 Hb_000421_130 Hb_001195_190--Hb_000421_130 Hb_010521_030 Hb_010521_030 Hb_010521_020--Hb_010521_030 Hb_005568_100 Hb_005568_100 Hb_010521_020--Hb_005568_100 Hb_000789_130 Hb_000789_130 Hb_010521_020--Hb_000789_130 Hb_000010_270 Hb_000010_270 Hb_010521_020--Hb_000010_270 Hb_010521_020--Hb_004296_010 Hb_000941_140 Hb_000941_140 Hb_004296_010--Hb_000941_140 Hb_006618_040 Hb_006618_040 Hb_004296_010--Hb_006618_040 Hb_000260_370 Hb_000260_370 Hb_004296_010--Hb_000260_370 Hb_004296_010--Hb_001269_310 Hb_002999_060 Hb_002999_060 Hb_004296_010--Hb_002999_060 Hb_013394_060 Hb_013394_060 Hb_004296_010--Hb_013394_060 Hb_000062_030 Hb_000062_030 Hb_000505_110--Hb_000062_030 Hb_000599_170 Hb_000599_170 Hb_000505_110--Hb_000599_170 Hb_008147_050 Hb_008147_050 Hb_000505_110--Hb_008147_050 Hb_001051_090 Hb_001051_090 Hb_000505_110--Hb_001051_090 Hb_004884_030 Hb_004884_030 Hb_000505_110--Hb_004884_030 Hb_013818_030 Hb_013818_030 Hb_000505_110--Hb_013818_030 Hb_007603_020 Hb_007603_020 Hb_001767_040--Hb_007603_020 Hb_000997_150 Hb_000997_150 Hb_001767_040--Hb_000997_150 Hb_000189_430 Hb_000189_430 Hb_001767_040--Hb_000189_430 Hb_001767_040--Hb_001269_310 Hb_097646_010 Hb_097646_010 Hb_001767_040--Hb_097646_010 Hb_001269_310--Hb_000997_150 Hb_004223_110 Hb_004223_110 Hb_001269_310--Hb_004223_110 Hb_001269_310--Hb_001051_090 Hb_002400_230 Hb_002400_230 Hb_001269_310--Hb_002400_230 Hb_000175_630 Hb_000175_630 Hb_001269_310--Hb_000175_630 Hb_003026_030 Hb_003026_030 Hb_001269_310--Hb_003026_030 Hb_000421_130--Hb_008147_050 Hb_001504_090 Hb_001504_090 Hb_000421_130--Hb_001504_090 Hb_002875_050 Hb_002875_050 Hb_000421_130--Hb_002875_050 Hb_001390_010 Hb_001390_010 Hb_000421_130--Hb_001390_010 Hb_000207_190 Hb_000207_190 Hb_000421_130--Hb_000207_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0307396 0.0829645 0.102978 0.0851509 0.269934 0.0358746
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0347257 0.0145862 0.0386976

CAGE analysis