Hb_001195_200

Information

Type -
Description -
Location Contig1195: 95339-99521
Sequence    

Annotation

kegg
ID rcu:RCOM_1594450
description DNA-3-methyladenine glycosylase, putative (EC:3.2.2.21)
nr
ID XP_012071867.1
description PREDICTED: uncharacterized protein LOC105633802 [Jatropha curcas]
swissprot
ID O94468
description Probable DNA-3-methyladenine glycosylase 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mag2 PE=1 SV=1
trembl
ID A0A067KQU6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04437 PE=4 SV=1
Gene Ontology
ID GO:0008725
description dna-3-methyladenine glycosylase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05791: 93272-99014 , PASA_asmbl_05793: 93132-98281
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001195_200 0.0 - - PREDICTED: uncharacterized protein LOC105633802 [Jatropha curcas]
2 Hb_000982_080 0.0584751476 desease resistance Gene Name: AAA PREDICTED: 26S proteasome regulatory subunit 4 homolog A [Jatropha curcas]
3 Hb_003768_030 0.0661529945 - - PREDICTED: ribosome biogenesis protein WDR12 homolog isoform X1 [Jatropha curcas]
4 Hb_001489_090 0.0685490563 - - PREDICTED: uncharacterized protein LOC105649775 [Jatropha curcas]
5 Hb_000327_180 0.0734698006 - - PREDICTED: TBC1 domain family member 10B-like isoform X1 [Jatropha curcas]
6 Hb_003376_250 0.0740637506 - - Transducin/WD40 repeat-like superfamily protein [Theobroma cacao]
7 Hb_000258_260 0.0749934268 - - PREDICTED: protein HGH1 homolog [Jatropha curcas]
8 Hb_005914_170 0.0767098527 - - PREDICTED: eukaryotic translation initiation factor isoform 4E-2-like [Gossypium raimondii]
9 Hb_003465_030 0.077102024 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001545_170 0.0773359386 - - PREDICTED: cleavage stimulating factor 64 isoform X1 [Jatropha curcas]
11 Hb_011344_190 0.0785875961 - - PREDICTED: maspardin [Jatropha curcas]
12 Hb_012423_030 0.0806140238 - - PREDICTED: probable sodium/metabolite cotransporter BASS6, chloroplastic isoform X1 [Jatropha curcas]
13 Hb_006420_080 0.0807238394 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial isoform X1 [Jatropha curcas]
14 Hb_012490_070 0.0838825896 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001222_080 0.0849579167 - - PREDICTED: uncharacterized protein LOC105642435 isoform X1 [Jatropha curcas]
16 Hb_003994_260 0.0854085996 - - PREDICTED: uncharacterized protein LOC105646151 [Jatropha curcas]
17 Hb_000603_080 0.085933206 - - PREDICTED: pentatricopeptide repeat-containing protein At4g33170 [Vitis vinifera]
18 Hb_000329_760 0.0869003627 - - PREDICTED: probable mitochondrial import inner membrane translocase subunit TIM21 [Jatropha curcas]
19 Hb_005488_200 0.087225946 - - PREDICTED: uncharacterized protein LOC105632499 isoform X1 [Jatropha curcas]
20 Hb_000053_020 0.0883087693 - - F-box and wd40 domain protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001195_200 Hb_001195_200 Hb_000982_080 Hb_000982_080 Hb_001195_200--Hb_000982_080 Hb_003768_030 Hb_003768_030 Hb_001195_200--Hb_003768_030 Hb_001489_090 Hb_001489_090 Hb_001195_200--Hb_001489_090 Hb_000327_180 Hb_000327_180 Hb_001195_200--Hb_000327_180 Hb_003376_250 Hb_003376_250 Hb_001195_200--Hb_003376_250 Hb_000258_260 Hb_000258_260 Hb_001195_200--Hb_000258_260 Hb_000982_080--Hb_003376_250 Hb_011344_190 Hb_011344_190 Hb_000982_080--Hb_011344_190 Hb_005488_200 Hb_005488_200 Hb_000982_080--Hb_005488_200 Hb_008232_010 Hb_008232_010 Hb_000982_080--Hb_008232_010 Hb_006420_080 Hb_006420_080 Hb_000982_080--Hb_006420_080 Hb_000053_020 Hb_000053_020 Hb_003768_030--Hb_000053_020 Hb_004324_270 Hb_004324_270 Hb_003768_030--Hb_004324_270 Hb_008453_030 Hb_008453_030 Hb_003768_030--Hb_008453_030 Hb_001489_080 Hb_001489_080 Hb_003768_030--Hb_001489_080 Hb_012423_030 Hb_012423_030 Hb_003768_030--Hb_012423_030 Hb_003465_030 Hb_003465_030 Hb_001489_090--Hb_003465_030 Hb_000347_240 Hb_000347_240 Hb_001489_090--Hb_000347_240 Hb_000948_160 Hb_000948_160 Hb_001489_090--Hb_000948_160 Hb_001489_090--Hb_008453_030 Hb_004586_420 Hb_004586_420 Hb_001489_090--Hb_004586_420 Hb_003847_030 Hb_003847_030 Hb_000327_180--Hb_003847_030 Hb_002799_070 Hb_002799_070 Hb_000327_180--Hb_002799_070 Hb_005054_110 Hb_005054_110 Hb_000327_180--Hb_005054_110 Hb_000327_180--Hb_003376_250 Hb_000603_080 Hb_000603_080 Hb_000327_180--Hb_000603_080 Hb_003376_250--Hb_011344_190 Hb_003376_250--Hb_005488_200 Hb_007416_060 Hb_007416_060 Hb_003376_250--Hb_007416_060 Hb_003994_260 Hb_003994_260 Hb_000258_260--Hb_003994_260 Hb_012490_070 Hb_012490_070 Hb_000258_260--Hb_012490_070 Hb_000069_420 Hb_000069_420 Hb_000258_260--Hb_000069_420 Hb_000258_260--Hb_000982_080 Hb_034406_030 Hb_034406_030 Hb_000258_260--Hb_034406_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.54375 6.80536 5.9518 9.04485 6.86185 6.21782
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.6863 16.6495 13.1926 13.6173 11.8372

CAGE analysis