Hb_001195_210

Information

Type -
Description -
Location Contig1195: 104843-108783
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001195_210 0.0 - - -
2 Hb_005672_030 0.1569839443 - - PREDICTED: high mobility group B protein 3-like [Jatropha curcas]
3 Hb_015934_100 0.1684582748 - - phospholipid/glycerol acyltransferase family protein [Populus trichocarpa]
4 Hb_000853_010 0.1700861825 - - Pectinesterase-3 precursor, putative [Ricinus communis]
5 Hb_000007_070 0.1747737153 - - hypothetical protein POPTR_0008s11290g [Populus trichocarpa]
6 Hb_146901_020 0.1792274845 - - -
7 Hb_001416_170 0.1838990446 - - kinase, putative [Ricinus communis]
8 Hb_003811_050 0.1867525038 - - hypothetical protein JCGZ_01310 [Jatropha curcas]
9 Hb_000975_130 0.1898259027 - - PREDICTED: uncharacterized protein LOC104445138 [Eucalyptus grandis]
10 Hb_000116_200 0.1930291979 transcription factor TF Family: HMG hypothetical protein POPTR_0005s10440g [Populus trichocarpa]
11 Hb_000031_330 0.1967571232 transcription factor TF Family: Orphans hypothetical protein POPTR_0157s00200g, partial [Populus trichocarpa]
12 Hb_000157_020 0.1968941553 - - conserved hypothetical protein [Ricinus communis]
13 Hb_185666_010 0.2008580421 transcription factor TF Family: ERF PREDICTED: dehydration-responsive element-binding protein 3 [Jatropha curcas]
14 Hb_180695_010 0.2009927591 - - hypothetical protein CICLE_v10013449mg [Citrus clementina]
15 Hb_055147_020 0.2019517927 - - hypothetical protein EUGRSUZ_C03837 [Eucalyptus grandis]
16 Hb_006834_010 0.2032084769 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002580_020 0.2051819059 - - hypothetical protein JCGZ_19971 [Jatropha curcas]
18 Hb_004984_020 0.2065721597 - - PREDICTED: uncharacterized protein LOC105647814 [Jatropha curcas]
19 Hb_000339_050 0.2075980403 - - PREDICTED: nucleobase-ascorbate transporter 2 [Jatropha curcas]
20 Hb_002936_020 0.2091411944 - - hypothetical protein VITISV_001748 [Vitis vinifera]

Gene co-expression network

sample Hb_001195_210 Hb_001195_210 Hb_005672_030 Hb_005672_030 Hb_001195_210--Hb_005672_030 Hb_015934_100 Hb_015934_100 Hb_001195_210--Hb_015934_100 Hb_000853_010 Hb_000853_010 Hb_001195_210--Hb_000853_010 Hb_000007_070 Hb_000007_070 Hb_001195_210--Hb_000007_070 Hb_146901_020 Hb_146901_020 Hb_001195_210--Hb_146901_020 Hb_001416_170 Hb_001416_170 Hb_001195_210--Hb_001416_170 Hb_000975_130 Hb_000975_130 Hb_005672_030--Hb_000975_130 Hb_003811_050 Hb_003811_050 Hb_005672_030--Hb_003811_050 Hb_000956_060 Hb_000956_060 Hb_005672_030--Hb_000956_060 Hb_000676_130 Hb_000676_130 Hb_005672_030--Hb_000676_130 Hb_002580_020 Hb_002580_020 Hb_005672_030--Hb_002580_020 Hb_005672_030--Hb_000853_010 Hb_180695_010 Hb_180695_010 Hb_015934_100--Hb_180695_010 Hb_185666_010 Hb_185666_010 Hb_015934_100--Hb_185666_010 Hb_133508_020 Hb_133508_020 Hb_015934_100--Hb_133508_020 Hb_096878_010 Hb_096878_010 Hb_015934_100--Hb_096878_010 Hb_185830_090 Hb_185830_090 Hb_015934_100--Hb_185830_090 Hb_010672_010 Hb_010672_010 Hb_015934_100--Hb_010672_010 Hb_000853_010--Hb_001416_170 Hb_006834_010 Hb_006834_010 Hb_000853_010--Hb_006834_010 Hb_000853_010--Hb_003811_050 Hb_000853_010--Hb_000975_130 Hb_000853_010--Hb_002580_020 Hb_004984_020 Hb_004984_020 Hb_000853_010--Hb_004984_020 Hb_000007_070--Hb_003811_050 Hb_081191_010 Hb_081191_010 Hb_000007_070--Hb_081191_010 Hb_000007_070--Hb_000975_130 Hb_001404_060 Hb_001404_060 Hb_000007_070--Hb_001404_060 Hb_000320_240 Hb_000320_240 Hb_000007_070--Hb_000320_240 Hb_006103_050 Hb_006103_050 Hb_000007_070--Hb_006103_050 Hb_000152_590 Hb_000152_590 Hb_146901_020--Hb_000152_590 Hb_027556_060 Hb_027556_060 Hb_146901_020--Hb_027556_060 Hb_146901_020--Hb_010672_010 Hb_013358_030 Hb_013358_030 Hb_146901_020--Hb_013358_030 Hb_003875_040 Hb_003875_040 Hb_146901_020--Hb_003875_040 Hb_003216_140 Hb_003216_140 Hb_146901_020--Hb_003216_140 Hb_001416_170--Hb_006834_010 Hb_055147_020 Hb_055147_020 Hb_001416_170--Hb_055147_020 Hb_001416_170--Hb_000975_130 Hb_001416_170--Hb_004984_020 Hb_055440_010 Hb_055440_010 Hb_001416_170--Hb_055440_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.32184 1.5137 3.49177 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.2674 0 1.35527 0

CAGE analysis