Hb_001195_220

Information

Type -
Description -
Location Contig1195: 104912-110616
Sequence    

Annotation

kegg
ID rcu:RCOM_1594440
description sugar transporter, putative (EC:1.3.1.74)
nr
ID XP_002510395.1
description sugar transporter, putative [Ricinus communis]
swissprot
ID Q9FRL3
description Sugar transporter ERD6-like 6 OS=Arabidopsis thaliana GN=At1g75220 PE=1 SV=1
trembl
ID B9R7V2
description Sugar transporter, putative OS=Ricinus communis GN=RCOM_1594440 PE=3 SV=1
Gene Ontology
ID GO:0016021
description sugar transporter erd6-like 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05796: 106129-110529 , PASA_asmbl_05797: 104908-110519 , PASA_asmbl_05798: 106581-106931
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001195_220 0.0 - - sugar transporter, putative [Ricinus communis]
2 Hb_000679_110 0.1048589655 - - PREDICTED: lysM domain receptor-like kinase 3 [Jatropha curcas]
3 Hb_007576_140 0.1134378859 rubber biosynthesis Gene Name: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [Hevea brasiliensis]
4 Hb_003659_010 0.1158750962 - - aldo/keto reductase AKR [Manihot esculenta]
5 Hb_001221_580 0.1200505078 - - PREDICTED: recQ-mediated genome instability protein 1 [Jatropha curcas]
6 Hb_000567_090 0.1342074822 - - PREDICTED: ketol-acid reductoisomerase, chloroplastic-like [Jatropha curcas]
7 Hb_129204_020 0.1353358649 - - PREDICTED: IAA-amino acid hydrolase ILR1-like 4 [Jatropha curcas]
8 Hb_002235_050 0.1425206556 - - PREDICTED: chorismate mutase 1, chloroplastic [Jatropha curcas]
9 Hb_000529_040 0.151380937 - - PREDICTED: uncharacterized protein LOC105641671 [Jatropha curcas]
10 Hb_005903_020 0.1517946802 - - 12-oxophytodienoate reductase 2 [Theobroma cacao]
11 Hb_002913_010 0.1537186642 - - PREDICTED: mitochondrial amidoxime reducing component 2-like isoform X1 [Jatropha curcas]
12 Hb_004108_210 0.1542558206 - - phenazine biosynthesis protein, putative [Ricinus communis]
13 Hb_000678_010 0.1559676984 - - PREDICTED: ketol-acid reductoisomerase, chloroplastic-like [Jatropha curcas]
14 Hb_019863_030 0.1564321463 - - hypothetical protein JCGZ_00393 [Jatropha curcas]
15 Hb_000296_010 0.1574265254 - - PREDICTED: TSL-kinase interacting protein 1 [Jatropha curcas]
16 Hb_000098_150 0.1645043303 - - DNA helicase hus2, putative [Ricinus communis]
17 Hb_080147_020 0.1646154611 - - 3-hydroxyacyl-CoA dehyrogenase, putative [Ricinus communis]
18 Hb_004297_090 0.170113395 - - PREDICTED: DNA polymerase epsilon catalytic subunit A [Jatropha curcas]
19 Hb_000258_090 0.172288859 - - PREDICTED: KH domain-containing protein At4g18375 isoform X2 [Jatropha curcas]
20 Hb_010872_050 0.1724979188 - - hypothetical protein B456_007G078100 [Gossypium raimondii]

Gene co-expression network

sample Hb_001195_220 Hb_001195_220 Hb_000679_110 Hb_000679_110 Hb_001195_220--Hb_000679_110 Hb_007576_140 Hb_007576_140 Hb_001195_220--Hb_007576_140 Hb_003659_010 Hb_003659_010 Hb_001195_220--Hb_003659_010 Hb_001221_580 Hb_001221_580 Hb_001195_220--Hb_001221_580 Hb_000567_090 Hb_000567_090 Hb_001195_220--Hb_000567_090 Hb_129204_020 Hb_129204_020 Hb_001195_220--Hb_129204_020 Hb_002235_050 Hb_002235_050 Hb_000679_110--Hb_002235_050 Hb_010872_050 Hb_010872_050 Hb_000679_110--Hb_010872_050 Hb_000679_110--Hb_007576_140 Hb_000679_110--Hb_129204_020 Hb_000679_110--Hb_003659_010 Hb_007576_140--Hb_003659_010 Hb_007123_080 Hb_007123_080 Hb_007576_140--Hb_007123_080 Hb_025787_010 Hb_025787_010 Hb_007576_140--Hb_025787_010 Hb_007576_140--Hb_000567_090 Hb_002701_160 Hb_002701_160 Hb_003659_010--Hb_002701_160 Hb_001240_050 Hb_001240_050 Hb_003659_010--Hb_001240_050 Hb_003659_010--Hb_002235_050 Hb_004108_210 Hb_004108_210 Hb_001221_580--Hb_004108_210 Hb_000098_150 Hb_000098_150 Hb_001221_580--Hb_000098_150 Hb_000890_160 Hb_000890_160 Hb_001221_580--Hb_000890_160 Hb_001221_580--Hb_000567_090 Hb_003428_090 Hb_003428_090 Hb_001221_580--Hb_003428_090 Hb_005903_020 Hb_005903_020 Hb_001221_580--Hb_005903_020 Hb_080147_020 Hb_080147_020 Hb_000567_090--Hb_080147_020 Hb_052135_020 Hb_052135_020 Hb_000567_090--Hb_052135_020 Hb_086639_050 Hb_086639_050 Hb_000567_090--Hb_086639_050 Hb_000098_180 Hb_000098_180 Hb_000567_090--Hb_000098_180 Hb_001117_080 Hb_001117_080 Hb_000567_090--Hb_001117_080 Hb_129204_020--Hb_052135_020 Hb_129204_020--Hb_001221_580 Hb_004837_220 Hb_004837_220 Hb_129204_020--Hb_004837_220 Hb_002317_010 Hb_002317_010 Hb_129204_020--Hb_002317_010 Hb_002107_100 Hb_002107_100 Hb_129204_020--Hb_002107_100 Hb_158445_020 Hb_158445_020 Hb_129204_020--Hb_158445_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.937635 5.93212 14.7583 5.58217 1.42936 1.28772
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.6141 2.5604 2.1671 11.9705 2.58676

CAGE analysis