Hb_001195_230

Information

Type -
Description -
Location Contig1195: 114269-115777
Sequence    

Annotation

kegg
ID rcu:RCOM_1594430
description acyltransferase, putative
nr
ID XP_012071864.1
description PREDICTED: 3-ketoacyl-CoA synthase 4 [Jatropha curcas]
swissprot
ID Q9LN49
description 3-ketoacyl-CoA synthase 4 OS=Arabidopsis thaliana GN=KCS4 PE=2 SV=1
trembl
ID A0A067L1Z1
description 3-ketoacyl-CoA synthase OS=Jatropha curcas GN=JCGZ_04435 PE=3 SV=1
Gene Ontology
ID GO:0016020
description 3-ketoacyl- synthase 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001195_230 0.0 - - PREDICTED: 3-ketoacyl-CoA synthase 4 [Jatropha curcas]
2 Hb_000096_110 0.0843667709 - - PREDICTED: uncharacterized protein LOC105787685 isoform X1 [Gossypium raimondii]
3 Hb_026698_020 0.1040419607 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
4 Hb_002888_040 0.1093882996 - - hypothetical protein B456_009G267200 [Gossypium raimondii]
5 Hb_000007_440 0.111178839 - - PREDICTED: putative phospholipid-transporting ATPase 9 [Jatropha curcas]
6 Hb_000320_450 0.1177142097 - - secretory peroxidase [Hevea brasiliensis]
7 Hb_001689_030 0.1230536228 - - PREDICTED: J domain-containing protein required for chloroplast accumulation response 1 [Jatropha curcas]
8 Hb_005539_100 0.1237077636 - - nucleoside transporter, putative [Ricinus communis]
9 Hb_002849_180 0.1240661486 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 2 [Jatropha curcas]
10 Hb_001514_240 0.1268351389 - - PREDICTED: aspartic proteinase CDR1 [Jatropha curcas]
11 Hb_009449_100 0.1284194084 - - PREDICTED: equilibrative nucleotide transporter 1 [Jatropha curcas]
12 Hb_001179_010 0.1301425505 - - PREDICTED: glycosyltransferase family protein 64 protein C5 [Jatropha curcas]
13 Hb_000329_790 0.1343513184 - - PREDICTED: uncharacterized protein LOC105643367 [Jatropha curcas]
14 Hb_001357_060 0.1360891319 transcription factor TF Family: Orphans PREDICTED: B-box zinc finger protein 18-like [Cicer arietinum]
15 Hb_000365_220 0.1377896881 - - protein phosphatase-1, putative [Ricinus communis]
16 Hb_003964_010 0.1380102987 transcription factor TF Family: WRKY hypothetical protein POPTR_0008s09360g [Populus trichocarpa]
17 Hb_003430_070 0.1401786396 - - PREDICTED: protein phosphatase 2C 37 [Jatropha curcas]
18 Hb_000024_130 0.142857793 - - conserved hypothetical protein [Ricinus communis]
19 Hb_025045_010 0.1433459184 - - catalytic, putative [Ricinus communis]
20 Hb_007483_080 0.1447812736 - - hypothetical protein RCOM_0634810 [Ricinus communis]

Gene co-expression network

sample Hb_001195_230 Hb_001195_230 Hb_000096_110 Hb_000096_110 Hb_001195_230--Hb_000096_110 Hb_026698_020 Hb_026698_020 Hb_001195_230--Hb_026698_020 Hb_002888_040 Hb_002888_040 Hb_001195_230--Hb_002888_040 Hb_000007_440 Hb_000007_440 Hb_001195_230--Hb_000007_440 Hb_000320_450 Hb_000320_450 Hb_001195_230--Hb_000320_450 Hb_001689_030 Hb_001689_030 Hb_001195_230--Hb_001689_030 Hb_000096_110--Hb_000320_450 Hb_002838_010 Hb_002838_010 Hb_000096_110--Hb_002838_010 Hb_001179_010 Hb_001179_010 Hb_000096_110--Hb_001179_010 Hb_002316_020 Hb_002316_020 Hb_000096_110--Hb_002316_020 Hb_000096_110--Hb_000007_440 Hb_001514_240 Hb_001514_240 Hb_026698_020--Hb_001514_240 Hb_000417_410 Hb_000417_410 Hb_026698_020--Hb_000417_410 Hb_009449_100 Hb_009449_100 Hb_026698_020--Hb_009449_100 Hb_026698_020--Hb_002888_040 Hb_132840_030 Hb_132840_030 Hb_026698_020--Hb_132840_030 Hb_000365_220 Hb_000365_220 Hb_002888_040--Hb_000365_220 Hb_002888_040--Hb_001689_030 Hb_003517_100 Hb_003517_100 Hb_002888_040--Hb_003517_100 Hb_001268_300 Hb_001268_300 Hb_002888_040--Hb_001268_300 Hb_007483_080 Hb_007483_080 Hb_000007_440--Hb_007483_080 Hb_002849_180 Hb_002849_180 Hb_000007_440--Hb_002849_180 Hb_002010_100 Hb_002010_100 Hb_000007_440--Hb_002010_100 Hb_006483_090 Hb_006483_090 Hb_000007_440--Hb_006483_090 Hb_001158_120 Hb_001158_120 Hb_000007_440--Hb_001158_120 Hb_006970_170 Hb_006970_170 Hb_000007_440--Hb_006970_170 Hb_000320_450--Hb_002849_180 Hb_000320_450--Hb_000007_440 Hb_000320_450--Hb_002838_010 Hb_000320_450--Hb_006970_170 Hb_002344_080 Hb_002344_080 Hb_001689_030--Hb_002344_080 Hb_003177_090 Hb_003177_090 Hb_001689_030--Hb_003177_090 Hb_000103_410 Hb_000103_410 Hb_001689_030--Hb_000103_410 Hb_000816_160 Hb_000816_160 Hb_001689_030--Hb_000816_160 Hb_003007_030 Hb_003007_030 Hb_001689_030--Hb_003007_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.6707 20.5325 19.1535 14.8826 0.756183 0.560652
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.558266 0.561205 1.05463 12.3878 17.6155

CAGE analysis