Hb_001195_290

Information

Type -
Description -
Location Contig1195: 161573-163522
Sequence    

Annotation

kegg
ID pop:POPTR_0002s26190g
description POPTRDRAFT_830621; hypothetical protein
nr
ID XP_012071849.1
description PREDICTED: uncharacterized protein LOC105633792 [Jatropha curcas]
swissprot
ID B1MEP9
description Putative S-adenosyl-L-methionine-dependent methyltransferase MAB_0213c OS=Mycobacterium abscessus (strain ATCC 19977 / DSM 44196) GN=MAB_0213c PE=3 SV=1
trembl
ID A0A067KU37
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04428 PE=4 SV=1
Gene Ontology
ID GO:0008168
description s-adenosyl-l-methionine-dependent methyltransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05810: 161413-163632 , PASA_asmbl_05812: 163853-164249
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001195_290 0.0 - - PREDICTED: uncharacterized protein LOC105633792 [Jatropha curcas]
2 Hb_006472_040 0.0705408628 - - PREDICTED: inner membrane protein PPF-1, chloroplastic [Jatropha curcas]
3 Hb_001517_010 0.0797325797 - - conserved hypothetical protein [Ricinus communis]
4 Hb_008112_020 0.0856775042 - - PREDICTED: magnesium transporter MRS2-11, chloroplastic [Jatropha curcas]
5 Hb_005210_010 0.0896214837 - - PREDICTED: uncharacterized protein LOC105638163 [Jatropha curcas]
6 Hb_001268_170 0.0924465316 - - glycerophosphodiester phosphodiesterase, putative [Ricinus communis]
7 Hb_134949_010 0.0930669838 - - PREDICTED: uncharacterized protein LOC105629574 [Jatropha curcas]
8 Hb_003602_100 0.0932321689 - - Glutamyl-tRNA reductase 1, chloroplast precursor, putative [Ricinus communis]
9 Hb_000856_280 0.0938129681 - - PREDICTED: uncharacterized protein LOC105640491 [Jatropha curcas]
10 Hb_001584_210 0.0957186365 - - PREDICTED: chloroplast stem-loop binding protein of 41 kDa b, chloroplastic [Jatropha curcas]
11 Hb_005523_040 0.0957416897 - - PREDICTED: uncharacterized protein LOC100253680 [Vitis vinifera]
12 Hb_000390_160 0.0996283895 - - PREDICTED: adenosine kinase [Jatropha curcas]
13 Hb_000317_180 0.1040384005 - - PREDICTED: protein THYLAKOID FORMATION1, chloroplastic [Jatropha curcas]
14 Hb_000049_100 0.1045631234 - - Photosystem II reaction center W protein, putative [Ricinus communis]
15 Hb_011282_040 0.1080416498 - - Sec14 cytosolic factor, putative [Ricinus communis]
16 Hb_007803_040 0.108591173 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP37, chloroplastic [Jatropha curcas]
17 Hb_002477_020 0.1096110328 - - PREDICTED: uncharacterized protein LOC105631402 [Jatropha curcas]
18 Hb_000898_090 0.1099473508 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105633600 isoform X1 [Jatropha curcas]
19 Hb_002475_060 0.1109188233 - - PREDICTED: potassium channel SKOR-like isoform X1 [Jatropha curcas]
20 Hb_169383_010 0.1126706489 - - PREDICTED: phosphoglycolate phosphatase 1B, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_001195_290 Hb_001195_290 Hb_006472_040 Hb_006472_040 Hb_001195_290--Hb_006472_040 Hb_001517_010 Hb_001517_010 Hb_001195_290--Hb_001517_010 Hb_008112_020 Hb_008112_020 Hb_001195_290--Hb_008112_020 Hb_005210_010 Hb_005210_010 Hb_001195_290--Hb_005210_010 Hb_001268_170 Hb_001268_170 Hb_001195_290--Hb_001268_170 Hb_134949_010 Hb_134949_010 Hb_001195_290--Hb_134949_010 Hb_006472_040--Hb_008112_020 Hb_000679_320 Hb_000679_320 Hb_006472_040--Hb_000679_320 Hb_169383_010 Hb_169383_010 Hb_006472_040--Hb_169383_010 Hb_000317_180 Hb_000317_180 Hb_006472_040--Hb_000317_180 Hb_009393_140 Hb_009393_140 Hb_006472_040--Hb_009393_140 Hb_000107_540 Hb_000107_540 Hb_001517_010--Hb_000107_540 Hb_005523_040 Hb_005523_040 Hb_001517_010--Hb_005523_040 Hb_001517_010--Hb_134949_010 Hb_001584_210 Hb_001584_210 Hb_001517_010--Hb_001584_210 Hb_001691_180 Hb_001691_180 Hb_001517_010--Hb_001691_180 Hb_022693_010 Hb_022693_010 Hb_008112_020--Hb_022693_010 Hb_004979_050 Hb_004979_050 Hb_008112_020--Hb_004979_050 Hb_008112_020--Hb_000679_320 Hb_008112_020--Hb_169383_010 Hb_005210_010--Hb_005523_040 Hb_000049_100 Hb_000049_100 Hb_005210_010--Hb_000049_100 Hb_000390_160 Hb_000390_160 Hb_005210_010--Hb_000390_160 Hb_000856_280 Hb_000856_280 Hb_005210_010--Hb_000856_280 Hb_006970_030 Hb_006970_030 Hb_005210_010--Hb_006970_030 Hb_011282_040 Hb_011282_040 Hb_001268_170--Hb_011282_040 Hb_001268_170--Hb_000390_160 Hb_001141_340 Hb_001141_340 Hb_001268_170--Hb_001141_340 Hb_001268_170--Hb_005210_010 Hb_002071_030 Hb_002071_030 Hb_001268_170--Hb_002071_030 Hb_134949_010--Hb_002071_030 Hb_000029_330 Hb_000029_330 Hb_134949_010--Hb_000029_330 Hb_134949_010--Hb_000317_180 Hb_009296_030 Hb_009296_030 Hb_134949_010--Hb_009296_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.466932 1.59953 19.8948 11.887 0.519432 0.377803
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.14623 0.98771 0.688697 1.0355 44.3602

CAGE analysis