Hb_001195_300

Information

Type -
Description -
Location Contig1195: 165743-169989
Sequence    

Annotation

kegg
ID pop:POPTR_0014s18320g
description POPTRDRAFT_1100445; hypothetical protein
nr
ID XP_012071845.1
description PREDICTED: DUF21 domain-containing protein At1g47330 isoform X1 [Jatropha curcas]
swissprot
ID Q8RY60
description DUF21 domain-containing protein At1g47330 OS=Arabidopsis thaliana GN=CBSDUF7 PE=1 SV=1
trembl
ID A0A067KQT7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04427 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001195_300 0.0 - - PREDICTED: DUF21 domain-containing protein At1g47330 isoform X1 [Jatropha curcas]
2 Hb_001329_190 0.2476873295 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
3 Hb_004846_100 0.2706228691 - - Na(+)/H(+) antiporter, putative [Ricinus communis]
4 Hb_006970_140 0.2712471201 - - PREDICTED: histone H3.2-like [Solanum lycopersicum]
5 Hb_004162_230 0.2848150779 - - PREDICTED: histone H2B [Jatropha curcas]
6 Hb_003938_210 0.3060335968 - - triacylglycerol lipase, putative [Ricinus communis]
7 Hb_001437_090 0.3060571708 - - PREDICTED: phosphatidylinositol N-acetylglucosaminyltransferase gpi3 subunit [Jatropha curcas]
8 Hb_000173_050 0.3080679784 - - basic 7S globulin 2 precursor small subunit, putative [Ricinus communis]
9 Hb_000172_160 0.3091383885 - - hypothetical protein POPTR_0007s05770g [Populus trichocarpa]
10 Hb_011485_090 0.3094253269 - - -
11 Hb_036790_030 0.3112327747 - - PREDICTED: UPF0544 protein C5orf45 homolog [Jatropha curcas]
12 Hb_010488_040 0.3113426654 - - PREDICTED: phosphomannomutase [Populus euphratica]
13 Hb_001005_160 0.320578006 - - conserved hypothetical protein [Ricinus communis]
14 Hb_003178_020 0.3209734847 transcription factor TF Family: B3 conserved hypothetical protein [Ricinus communis]
15 Hb_001124_070 0.3232596546 - - Serine/threonine-protein kinase ULK4 [Gossypium arboreum]
16 Hb_021495_010 0.323283907 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001140_070 0.3234911307 - - Chromosome transmission fidelity protein 8, putative isoform 2 [Theobroma cacao]
18 Hb_004449_040 0.3240818059 - - PREDICTED: uncharacterized protein C630.12 [Jatropha curcas]
19 Hb_000544_030 0.3258399131 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002259_200 0.3261742226 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001195_300 Hb_001195_300 Hb_001329_190 Hb_001329_190 Hb_001195_300--Hb_001329_190 Hb_004846_100 Hb_004846_100 Hb_001195_300--Hb_004846_100 Hb_006970_140 Hb_006970_140 Hb_001195_300--Hb_006970_140 Hb_004162_230 Hb_004162_230 Hb_001195_300--Hb_004162_230 Hb_003938_210 Hb_003938_210 Hb_001195_300--Hb_003938_210 Hb_001437_090 Hb_001437_090 Hb_001195_300--Hb_001437_090 Hb_001329_190--Hb_004162_230 Hb_157022_030 Hb_157022_030 Hb_001329_190--Hb_157022_030 Hb_000739_270 Hb_000739_270 Hb_001329_190--Hb_000739_270 Hb_010488_040 Hb_010488_040 Hb_001329_190--Hb_010488_040 Hb_011609_040 Hb_011609_040 Hb_001329_190--Hb_011609_040 Hb_013834_010 Hb_013834_010 Hb_001329_190--Hb_013834_010 Hb_155541_010 Hb_155541_010 Hb_004846_100--Hb_155541_010 Hb_001862_120 Hb_001862_120 Hb_004846_100--Hb_001862_120 Hb_000743_030 Hb_000743_030 Hb_004846_100--Hb_000743_030 Hb_010913_010 Hb_010913_010 Hb_004846_100--Hb_010913_010 Hb_000275_020 Hb_000275_020 Hb_004846_100--Hb_000275_020 Hb_001005_160 Hb_001005_160 Hb_004846_100--Hb_001005_160 Hb_000173_050 Hb_000173_050 Hb_006970_140--Hb_000173_050 Hb_003178_020 Hb_003178_020 Hb_006970_140--Hb_003178_020 Hb_006275_060 Hb_006275_060 Hb_006970_140--Hb_006275_060 Hb_101146_010 Hb_101146_010 Hb_006970_140--Hb_101146_010 Hb_000684_120 Hb_000684_120 Hb_006970_140--Hb_000684_120 Hb_030627_070 Hb_030627_070 Hb_006970_140--Hb_030627_070 Hb_002411_060 Hb_002411_060 Hb_004162_230--Hb_002411_060 Hb_004162_230--Hb_157022_030 Hb_002307_020 Hb_002307_020 Hb_004162_230--Hb_002307_020 Hb_036790_030 Hb_036790_030 Hb_004162_230--Hb_036790_030 Hb_004162_230--Hb_000739_270 Hb_010998_050 Hb_010998_050 Hb_004162_230--Hb_010998_050 Hb_003938_210--Hb_001437_090 Hb_000497_200 Hb_000497_200 Hb_003938_210--Hb_000497_200 Hb_001140_070 Hb_001140_070 Hb_003938_210--Hb_001140_070 Hb_050959_010 Hb_050959_010 Hb_003938_210--Hb_050959_010 Hb_000656_190 Hb_000656_190 Hb_003938_210--Hb_000656_190 Hb_006210_030 Hb_006210_030 Hb_003938_210--Hb_006210_030 Hb_009393_190 Hb_009393_190 Hb_001437_090--Hb_009393_190 Hb_009615_020 Hb_009615_020 Hb_001437_090--Hb_009615_020 Hb_001437_090--Hb_001140_070 Hb_000948_200 Hb_000948_200 Hb_001437_090--Hb_000948_200 Hb_000868_050 Hb_000868_050 Hb_001437_090--Hb_000868_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.01468 0.014625 0.178547 0.121403 0.0559593 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.133854 0.0526515 0 0.0210343 0

CAGE analysis